Comparing 3608990 Dshi_2380 ABC transporter related (RefSeq) to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
Q9AT00 Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic; ABC transporter I family member 13; ABC transporter ABCI.13; AtABCI13; Non-intrinsic ABC protein 11; AtNAP11 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
40% identity, 95% coverage: 10:253/257 of query aligns to 84:343/345 of Q9AT00
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
38% identity, 95% coverage: 10:254/257 of query aligns to 4:249/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
38% identity, 95% coverage: 10:254/257 of query aligns to 4:249/263 of 7d08B
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
38% identity, 95% coverage: 10:254/257 of query aligns to 2:247/253 of 6z5uK
7chaI Cryo-em structure of p.Aeruginosa mlafebd with amppnp (see paper)
39% identity, 95% coverage: 11:253/257 of query aligns to 4:247/262 of 7chaI
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
41% identity, 84% coverage: 9:224/257 of query aligns to 1:214/241 of 4u00A
7ch8I Cryo-em structure of p.Aeruginosa mlafebd with adp-v (see paper)
37% identity, 95% coverage: 11:253/257 of query aligns to 4:244/259 of 7ch8I
7ch6C Cryo-em structure of e.Coli mlafeb with amppnp (see paper)
39% identity, 95% coverage: 10:253/257 of query aligns to 4:248/265 of 7ch6C
6xgyA Crystal structure of e. Coli mlafb abc transport subunits in the dimeric state (see paper)
39% identity, 95% coverage: 10:253/257 of query aligns to 4:248/264 of 6xgyA
7cgnB The overall structure of the mlafedb complex in atp-bound eqtall conformation (mutation of e170q on mlaf) (see paper)
38% identity, 95% coverage: 10:253/257 of query aligns to 4:248/263 of 7cgnB
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
38% identity, 85% coverage: 10:228/257 of query aligns to 1:218/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
38% identity, 87% coverage: 10:233/257 of query aligns to 3:225/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
38% identity, 87% coverage: 10:233/257 of query aligns to 3:225/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
38% identity, 87% coverage: 10:233/257 of query aligns to 3:225/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
38% identity, 87% coverage: 10:233/257 of query aligns to 3:225/242 of 2oljA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
35% identity, 93% coverage: 10:248/257 of query aligns to 1:244/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
35% identity, 93% coverage: 10:248/257 of query aligns to 2:245/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
35% identity, 93% coverage: 10:248/257 of query aligns to 2:245/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
35% identity, 93% coverage: 10:248/257 of query aligns to 2:245/344 of 3tuiC
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
33% identity, 85% coverage: 33:251/257 of query aligns to 49:269/382 of 7ahhC
Sites not aligning to the query:
>3608990 Dshi_2380 ABC transporter related (RefSeq)
MTDTTSPPPMIELRGVSKAFGPKEVLRGVDLVIPKGESMVIIGGSGTGKSVMLKSVLGLI
SPDAGQILVDGKDVEKVERDAFLARFGMLFQGGALFDSLPVWQNVSFRLLRGALKRPRAE
ARDIAIEKLRRVGLTPDVADQFPAELSGGMQKRVGLARAIAAEPEIIFFDEPTTGLDPIM
SGVINDLIREIVVEMGATAMTITHDMTSVRAIADDVAMLHGGKIRWTGPVSDMDHSGDPY
LTQFISGSADGPIEAVR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory