SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 3609041 FitnessBrowser__Dino:3609041 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 4 hits to proteins with known functional sites (download)

2qlxA Crystal structure of rhamnose mutarotase rhau of rhizobium leguminosarum in complex with l-rhamnose (see paper)
69% identity, 93% coverage: 9:112/112 of query aligns to 5:108/108 of 2qlxA

query
sites
2qlxA
M
 
L
E
 
E
K
 
K
I
 
H
A
 
A
F
 
F
K
 
K
M
|
M
M
 
Q
L
 
L
N
 
N
P
 
P
G
 
G
C
 
M
R
 
E
E
 
A
E
 
E
Y
|
Y
I
 
R
K
 
K
R
 
R
H
|
H
D
 
D
A
 
E
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
V
 
V
D
 
D
L
 
L
L
 
L
R
 
H
K
 
Q
A
 
S
G
 
G
V
 
A
S
 
S
D
 
D
Y
|
Y
S
 
S
I
 
I
H
 
H
L
 
L
D
 
D
P
 
R
E
 
E
T
 
T
D
 
N
T
 
T
L
 
L
F
 
F
A
 
G
V
 
V
L
 
L
W
 
T
R
 
R
K
 
P
E
 
K
G
 
D
H
 
H
G
 
T
M
 
M
D
 
A
D
 
S
L
 
L
P
 
P
S
 
D
H
 
H
P
 
P
V
 
V
M
 
M
Q
 
K
K
 
K
W
|
W
W
|
W
A
 
A
H
 
H
M
 
M
A
 
A
D
 
D
I
 
I
M
 
M
Q
 
A
T
 
T
Q
 
N
P
 
P
D
 
D
N
 
N
A
 
S
P
 
P
V
 
V
V
 
Q
T
 
S
P
 
D
L
 
L
D
 
V
T
 
T
V
 
L
F
 
F
H
 
H
M
 
M
P
 
P

2qlwB Crystal structure of rhamnose mutarotase rhau of rhizobium leguminosarum (see paper)
69% identity, 93% coverage: 9:112/112 of query aligns to 5:108/108 of 2qlwB

query
sites
2qlwB
M
 
L
E
 
E
K
 
K
I
 
H
A
 
A
F
 
F
K
 
K
M
 
M
M
 
Q
L
 
L
N
 
N
P
 
P
G
 
G
C
 
M
R
 
E
E
 
A
E
 
E
Y
 
Y
I
 
R
K
 
K
R
 
R
H
 
H
D
 
D
A
 
E
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
V
 
V
D
 
D
L
 
L
L
 
L
R
 
H
K
 
Q
A
 
S
G
 
G
V
 
A
S
 
S
D
 
D
Y
 
Y
S
 
S
I
 
I
H
 
H
L
 
L
D
 
D
P
 
R
E
 
E
T
 
T
D
 
N
T
 
T
L
 
L
F
 
F
A
 
G
V
 
V
L
 
L
W
 
T
R
 
R
K
 
P
E
 
K
G
 
D
H
 
H
G
 
T
M
 
M
D
 
A
D
 
S
L
 
L
P
 
P
S
 
D
H
 
H
P
 
P
V
 
V
M
 
M
Q
 
K
K
 
K
W
 
W
W
 
W
A
 
A
H
 
H
M
 
M
A
|
A
D
 
D
I
 
I
M
|
M
Q
 
A
T
|
T
Q
 
N
P
 
P
D
 
D
N
 
N
A
 
S
P
 
P
V
 
V
V
 
Q
T
 
S
P
 
D
L
 
L
D
 
V
T
 
T
V
 
L
F
 
F
H
 
H
M
 
M
P
 
P

1x8dA Crystal structure of e. Coli yiil protein containing l-rhamnose (see paper)
40% identity, 93% coverage: 9:112/112 of query aligns to 1:104/104 of 1x8dA

query
sites
1x8dA
M
 
M
E
 
I
K
 
R
I
 
K
A
 
A
F
 
F
K
 
V
M
 
M
M
 
Q
L
 
V
N
 
N
P
 
P
G
 
D
C
 
A
R
 
H
E
 
E
E
 
E
Y
|
Y
I
 
Q
K
 
R
R
 
R
H
|
H
D
 
N
A
 
P
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
V
 
E
D
 
A
L
 
V
L
 
L
R
 
K
K
 
S
A
 
H
G
 
G
V
 
A
S
 
H
D
 
N
Y
|
Y
S
 
A
I
 
I
H
 
Y
L
 
L
D
 
D
P
 
K
E
 
A
T
 
R
D
 
N
T
 
L
L
 
L
F
 
F
A
 
A
V
 
M
L
 
V
W
 
E
R
 
I
K
 
E
E
 
S
G
 
E
H
 
E
G
 
R
M
 
W
D
 
N
D
 
A
L
 
V
P
 
A
S
 
S
H
 
T
P
 
D
V
 
V
M
 
C
Q
 
Q
K
 
R
W
|
W
W
|
W
A
 
K
H
 
Y
M
 
M
A
 
T
D
 
D
I
 
V
M
 
M
Q
 
P
T
 
A
Q
 
N
P
 
P
D
 
D
N
 
N
A
 
S
P
 
P
V
 
V
V
 
S
T
 
S
P
 
E
L
 
L
D
 
Q
T
 
E
V
 
V
F
 
F
H
 
Y
M
 
L
P
 
P

P32156 L-rhamnose mutarotase; Rhamnose 1-epimerase; Type-3 mutarotase; EC 5.1.3.32 from Escherichia coli (strain K12) (see paper)
40% identity, 93% coverage: 9:112/112 of query aligns to 1:104/104 of P32156

query
sites
P32156
M
 
M
E
 
I
K
 
R
I
 
K
A
 
A
F
 
F
K
 
V
M
 
M
M
 
Q
L
 
V
N
 
N
P
 
P
G
 
D
C
 
A
R
 
H
E
 
E
E
 
E
Y
|
Y
I
 
Q
K
 
R
R
 
R
H
 
H
D
 
N
A
 
P
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
V
 
E
D
 
A
L
 
V
L
 
L
R
 
K
K
 
S
A
 
H
G
 
G
V
 
A
S
 
H
D
 
N
Y
 
Y
S
 
A
I
 
I
H
 
Y
L
 
L
D
 
D
P
 
K
E
 
A
T
 
R
D
 
N
T
 
L
L
 
L
F
 
F
A
 
A
V
 
M
L
 
V
W
 
E
R
 
I
K
 
E
E
 
S
G
 
E
H
 
E
G
 
R
M
 
W
D
 
N
D
 
A
L
 
V
P
 
A
S
 
S
H
 
T
P
 
D
V
 
V
M
 
C
Q
 
Q
K
 
R
W
 
W
W
 
W
A
 
K
H
 
Y
M
 
M
A
 
T
D
 
D
I
 
V
M
 
M
Q
 
P
T
 
A
Q
 
N
P
 
P
D
 
D
N
 
N
A
 
S
P
 
P
V
 
V
V
 
S
T
 
S
P
 
E
L
 
L
D
 
Q
T
 
E
V
 
V
F
 
F
H
 
Y
M
 
L
P
 
P

Query Sequence

>3609041 FitnessBrowser__Dino:3609041
MVHVAGALMEKIAFKMMLNPGCREEYIKRHDAIWPELVDLLRKAGVSDYSIHLDPETDTL
FAVLWRKEGHGMDDLPSHPVMQKWWAHMADIMQTQPDNAPVVTPLDTVFHMP

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory