Comparing 3609744 FitnessBrowser__Dino:3609744 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
5iaiA Crystal structure of abc transporter solute binding protein arad_9887 from agrobacterium radiobacter k84, target efi-510945 in complex with ribitol
20% identity, 78% coverage: 58:508/579 of query aligns to 1:390/399 of 5iaiA
Q7LYW7 Trehalose/maltose-binding protein MalE; TMBP from Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C) (see paper)
24% identity, 59% coverage: 173:514/579 of query aligns to 153:443/450 of Q7LYW7
Sites not aligning to the query:
>3609744 FitnessBrowser__Dino:3609744
MRKYLLSAVAAGAVIAGQSGAMADEAAAQRWIDEEFQPSTLSKEEQLEEMRWFIQAAEPF
AGMEINVLSEGIPTHSYESEVLTRAFEEITGIKVNHQILGEGEVVQAVQTQMQTGRNLYD
GYVNDSDLIGTHSRLQLAYNLTEQMAGDWAATTSPTLDLEDFMGIQFTTGPDGNLYQLPD
QQFANLYWFRKDWFDDEANKAAFKEKYGYELGVPVNWSAYEDIAEFFTNDVQEIDGVRIY
GHMDYGKRAPDLGWRMTDAWLSMAGAGDVGEPNGVPVDEWGIRMEAGTCNPVGASVTRGG
AANGPAAVYAIRKWDEWLRNYAPPGAASYDFYQSLPALSQGNVAQQIFWYTAFTADMVKP
KSEGNNTVDDDGNPLWRMAPSPHGPYWTEGQKVGYQDVGSWTFLKSTPSDRAQAAWLYAQ
FVTSKTVDVKKSHVGLTFIRDSSVRHESFTERAPKLGGLVEFYRSPDRTAWSPTGINVPD
YPKLAQIWWQQIGDVNSGAFTPQEAMDRLAEEMDITMARMQQADEAAGVYGGCGPRLNEE
RDAEYWFSQPGSPKPKLANEKPQGETVNYDELVARWQAQ
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory