Comparing 3609748 Dshi_3131 binding-protein-dependent transport systems inner membrane component (RefSeq) to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
24% identity, 95% coverage: 13:265/265 of query aligns to 24:279/281 of P94530
P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
25% identity, 96% coverage: 11:265/265 of query aligns to 23:294/296 of P68183
>3609748 Dshi_3131 binding-protein-dependent transport systems inner membrane component (RefSeq)
MRKRSLIPIFYILFLMLPIYWLVTMSFKTTNEILAGFTLFPQTFTLDSYITIFTDPTWYW
GYINSIIYVSLNTVLSVAVALPAAYAFSRYRFLGDKQLFFWLLTNRMAPAAVFALPFFQL
YSSVKIFDTHLAVALAHTLFNVPLAVWILEGFMRSIPKELDETAYVDGYSFPRFFIKIFL
PNIGAGVGVAAFFCFMFSWVEMLLAKTLTAVEAKPIAAVMTRTASSAGYELGLLAAAGTL
TIIPGAIVIYFVRNYIARGFAMGRV
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory