Comparing 3610069 FitnessBrowser__Dino:3610069 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2hk9B Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution (see paper)
36% identity, 95% coverage: 1:264/278 of query aligns to 1:254/267 of 2hk9B
2hk9A Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution (see paper)
36% identity, 95% coverage: 1:264/278 of query aligns to 1:254/269 of 2hk9A
O67049 Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus (strain VF5) (see paper)
36% identity, 95% coverage: 1:264/278 of query aligns to 1:254/269 of O67049
Q5HNV1 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (see paper)
33% identity, 92% coverage: 11:267/278 of query aligns to 5:254/269 of Q5HNV1
3dooA Crystal structure of shikimate dehydrogenase from staphylococcus epidermidis complexed with shikimate (see paper)
31% identity, 93% coverage: 10:267/278 of query aligns to 4:245/258 of 3dooA
1nytA Shikimate dehydrogenase aroe complexed with NADP+ (see paper)
36% identity, 94% coverage: 11:272/278 of query aligns to 6:264/271 of 1nytA
P15770 Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Escherichia coli (strain K12) (see paper)
36% identity, 94% coverage: 11:272/278 of query aligns to 6:264/272 of P15770
Q9KVT3 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
36% identity, 94% coverage: 11:272/278 of query aligns to 10:271/278 of Q9KVT3
3pgjA 2.49 angstrom resolution crystal structure of shikimate 5- dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. N16961 in complex with shikimate
36% identity, 94% coverage: 11:272/278 of query aligns to 6:267/272 of 3pgjA
2ev9B Crystal structure of shikimate 5-dehydrogenase (aroe) from thermus thermophilus hb8 in complex with NADP(h) and shikimate (see paper)
40% identity, 92% coverage: 11:266/278 of query aligns to 6:249/263 of 2ev9B
Q5SJF8 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see paper)
40% identity, 92% coverage: 11:266/278 of query aligns to 6:249/263 of Q5SJF8
2cy0A Crystal structure of shikimate 5-dehydrogenase (aroe) from thermus thermophilus hb8 in complex with NADP (see paper)
40% identity, 92% coverage: 11:266/278 of query aligns to 6:249/262 of 2cy0A
P43876 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see paper)
33% identity, 97% coverage: 6:276/278 of query aligns to 1:272/272 of P43876
3sefC 2.4 angstrom resolution crystal structure of shikimate 5-dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. N16961 in complex with shikimate and NADPH
34% identity, 94% coverage: 11:272/278 of query aligns to 6:240/244 of 3sefC
Q58484 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
35% identity, 96% coverage: 1:267/278 of query aligns to 1:269/282 of Q58484
1nvtB Crystal structure of shikimate dehydrogenase (aroe or mj1084) in complex with NADP+ (see paper)
35% identity, 96% coverage: 1:267/278 of query aligns to 6:274/287 of 1nvtB
1nvtA Crystal structure of shikimate dehydrogenase (aroe or mj1084) in complex with NADP+ (see paper)
35% identity, 96% coverage: 1:267/278 of query aligns to 6:274/287 of 1nvtA
3sefA 2.4 angstrom resolution crystal structure of shikimate 5-dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. N16961 in complex with shikimate and NADPH
35% identity, 94% coverage: 11:272/278 of query aligns to 6:263/268 of 3sefA
1npdB X-ray structure of shikimate dehydrogenase complexed with NAD+ from e.Coli (ydib) northeast structural genomics research consortium (nesg) target er24 (see paper)
32% identity, 93% coverage: 5:262/278 of query aligns to 6:272/288 of 1npdB
P0A6D5 Quinate/shikimate dehydrogenase; NAD-dependent shikimate 5-dehydrogenase; EC 1.1.1.282 from Escherichia coli (strain K12) (see 4 papers)
32% identity, 93% coverage: 5:262/278 of query aligns to 6:272/288 of P0A6D5
Sites not aligning to the query:
>3610069 FitnessBrowser__Dino:3610069
MTEIKVPIAGVIGNPITHSRSPHLHRHWLHVYGIEGYYVPLHVQGQDLAEVFHALPKLGF
KGVNVTLPFKERAIELADRVSDRAALIGAANTITFQPDGTIHADNTDGYGFIENLRNGAP
GWSPRAAAIVVLGAGGAARGVLSALLEAGAPEVRLANRTRAKAEALRSDFGPRVTVVDWH
GVSGTMEDAETLVNTTSLGMTGQPDLELNLDALPRSAVVTDIVYRPLMTPLLEQAVARGN
PVVDGLGMLLFQAAPGFERWFGVRPEITPELRAAALAE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory