Comparing 3610415 FitnessBrowser__Dino:3610415 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
35% identity, 90% coverage: 4:302/333 of query aligns to 2:309/330 of P0AAH4
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
35% identity, 92% coverage: 21:325/333 of query aligns to 21:324/326 of Q8RDH4
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
36% identity, 86% coverage: 21:308/333 of query aligns to 20:296/310 of 4fwiB
Sites not aligning to the query:
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
39% identity, 77% coverage: 3:259/333 of query aligns to 1:248/250 of 7z18I
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
39% identity, 77% coverage: 3:259/333 of query aligns to 1:248/253 of 7z15I
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
38% identity, 77% coverage: 3:259/333 of query aligns to 1:248/250 of 7z16I
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
39% identity, 71% coverage: 20:255/333 of query aligns to 14:236/241 of 4u00A
Sites not aligning to the query:
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
34% identity, 70% coverage: 24:255/333 of query aligns to 42:263/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
34% identity, 70% coverage: 24:255/333 of query aligns to 42:263/382 of 7aheC
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
30% identity, 77% coverage: 5:259/333 of query aligns to 1:245/343 of P30750
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
34% identity, 69% coverage: 24:252/333 of query aligns to 42:260/260 of 7ahdC
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
30% identity, 77% coverage: 5:259/333 of query aligns to 2:246/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
30% identity, 77% coverage: 5:259/333 of query aligns to 2:246/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
30% identity, 77% coverage: 5:259/333 of query aligns to 2:246/344 of 6cvlD
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
35% identity, 76% coverage: 5:256/333 of query aligns to 1:237/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
33% identity, 75% coverage: 6:256/333 of query aligns to 1:239/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
33% identity, 75% coverage: 6:256/333 of query aligns to 1:239/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
33% identity, 75% coverage: 6:256/333 of query aligns to 1:239/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
33% identity, 75% coverage: 6:256/333 of query aligns to 1:239/242 of 2oljA
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
32% identity, 78% coverage: 4:262/333 of query aligns to 16:256/378 of P69874
Sites not aligning to the query:
>3610415 FitnessBrowser__Dino:3610415
MTHPLVEMTDVTVRFDGTPPVHAVNGVSFKLAPGEVLGILGESGSGKSVTLKTLLRLLPE
KKTRIGGQVRVDGQDVLALNGRALADHRGGVVSMIFQDPALALDPVYTIGQQIAESVVRH
EGLSQRDAMARALEMLELVRIPSAKRRLKAYPHEMSGGMRQRAMIALALACKPKLLLADE
PTTALDATVQIQVLLLLRELQKEMGMGVIFVTHDIGVAVEVSDRLAVMYAGSFVETGSVA
EIIRDGRHPYTKGLLAANLVGAEPGTPLEAIPGAPPALHAPPVGCAFAPRCDRAREACAS
DPLPVWTQGPDRWARCVAAVEDARPSGQVSAAK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory