SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 3722085_28_214 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
27% identity, 98% coverage: 3:185/187 of query aligns to 47:235/240 of 4qhzC

query
sites
4qhzC
L
 
L
F
 
F
N
 
D
G
 
G
K
 
K
D
 
D
L
 
L
S
 
S
N
 
A
W
 
W
N
 
E
F
 
S
V
 
V
V
 
K
D
 
G
K
 
G
N
 
A
S
 
A
V
 
E
P
 
-
A
 
-
D
 
-
Q
 
-
V
 
-
Y
 
W
S
 
D
V
 
V
R
 
H
D
 
D
G
 
G
K
 
-
I
 
V
F
 
F
I
 
T
T
 
V
G
 
N
Q
 
K
P
 
K
F
 
K
G
 
G
Y
 
D
M
 
I
Y
 
Q
T
 
T
K
 
K
E
 
Q
K
 
K
Y
 
F
S
 
N
D
 
D
Y
 
F
K
 
Q
L
 
M
H
 
H
V
 
I
E
 
E
W
 
W
R
 
Q
W
 
V
P
 
P
N
 
T
-
 
N
-
 
I
-
 
T
-
 
G
-
 
E
G
 
S
D
 
Q
S
 
S
N
 
R
A
 
G
N
|
N
S
|
S
G
 
G
I
 
I
F
 
F
L
 
L
-
 
Q
-
 
G
-
 
M
H
 
Y
I
x
E
A
 
V
D
x
Q
L
 
V
K
 
L
N
 
D
P
 
C
F
 
Y
P
 
N
N
 
N
G
 
P
I
 
T
E
 
Y
C
 
V
N
 
N
L
 
G
Q
 
Q
A
 
T
G
 
G
R
 
S
A
 
-
G
 
-
L
 
-
F
 
-
V
 
I
L
 
Y
L
 
K
G
 
Q
G
 
S
S
 
I
D
 
P
L
 
L
V
 
A
E
 
N
Y
 
A
Q
 
M
Q
 
R
R
 
K
P
 
P
G
 
G
E
 
E
E
 
W
R
 
N
P
 
-
F
 
V
F
 
Y
P
 
D
V
 
I
V
 
I
K
 
Y
N
 
T
V
 
A
N
 
P
P
 
T
S
 
F
S
 
K
E
 
E
K
 
D
P
 
G
A
 
S
G
 
Y
E
 
R
W
 
T
N
 
H
E
 
P
A
 
T
N
 
V
I
 
T
F
 
V
V
 
I
K
 
Q
D
 
N
G
 
G
V
 
V
I
 
V
T
 
L
-
 
Q
-
 
N
-
 
H
V
 
T
Y
 
T
I
 
I
N
 
L
G
 
G
V
 
T
Y
 
T
Q
 
E
N
 
W
T
 
I
G
 
G
T
 
F
N
 
P
K
 
Q
V
 
V
K
 
K
E
 
K
-
 
H
-
 
G
-
 
A
G
 
G
H
 
P
I
 
I
G
 
I
L
 
L
Q
|
Q
S
 
S
E
 
H
G
 
G
-
 
D
-
 
P
-
 
S
K
 
E
E
 
P
V
 
I
E
 
S
F
 
F
R
 
R
N
 
N
V
 
I

Query Sequence

>3722085_28_214
EKLFNGKDLSNWNFVVDKNSVPADQVYSVRDGKIFITGQPFGYMYTKEKYSDYKLHVEWR
WPNGDSNANSGIFLHIADLKNPFPNGIECNLQAGRAGLFVLLGGSDLVEYQQRPGEERPF
FPVVKNVNPSSEKPAGEWNEANIFVKDGVITVYINGVYQNTGTNKVKEGHIGLQSEGKEV
EFRNVTL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory