SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 4590561_54_263 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
26% identity, 99% coverage: 4:210/210 of query aligns to 46:238/240 of 4qhzC

query
sites
4qhzC
L
 
V
L
 
L
F
 
F
D
 
D
G
 
G
K
 
K
T
 
D
T
 
L
D
 
S
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A
W
 
W
R
 
E
N
 
S
Y
 
V
K
 
K
K
 
-
E
 
-
G
 
G
V
 
G
S
 
A
D
 
A
G
 
E
W
 
W
T
 
D
I
 
V
K
 
H
D
 
D
G
 
G
V
 
V
L
 
F
S
 
T
R
 
V
S
 
N
A
 
K
K
 
K
G
 
-
A
 
K
G
 
G
D
 
D
I
 
I
I
 
Q
T
 
T
D
 
K
D
 
Q
Q
 
K
F
 
F
G
 
N
F
 
D
F
 
F
E
 
Q
L
 
M
S
 
H
L
 
I
E
 
E
Y
 
W
R
 
Q
I
 
V
-
 
P
-
 
T
-
 
N
-
 
I
-
 
T
-
 
G
-
 
E
-
 
S
S
 
Q
P
 
S
E
 
R
G
 
G
N
|
N
S
|
S
G
 
G
L
 
I
M
 
F
F
 
L
H
 
Q
V
 
G
T
 
M
E
 
Y
E
 
-
E
 
-
K
 
-
T
 
-
P
 
-
W
 
-
M
 
-
T
 
-
G
 
-
P
 
-
E
|
E
V
 
V
Q
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Q
I
 
V
Q
 
L
D
 
D
N
 
C
V
 
Y
D
 
N
G
 
-
H
 
-
D
 
N
P
 
P
Q
 
T
K
 
Y
A
 
V
-
 
N
G
 
G
W
 
Q
L
 
T
Y
 
G
Q
 
S
L
 
I
Y
 
Y
K
 
K
P
 
Q
A
 
S
T
 
I
P
 
P
K
 
-
W
 
-
M
 
-
I
 
-
E
 
-
A
 
-
E
 
-
K
 
-
A
 
-
G
 
-
K
 
-
K
 
-
V
 
-
T
 
-
P
 
-
A
 
-
V
 
L
V
 
A
D
 
N
A
 
A
T
 
M
R
 
R
P
 
K
A
 
P
G
 
G
D
 
E
W
 
W
N
 
N
-
 
V
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Y
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D
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I
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I
-
 
Y
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T
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A
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P
L
 
T
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F
L
 
K
R
 
E
V
 
D
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G
P
 
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D
 
Y
R
 
R
S
 
T
Q
 
H
-
 
P
-
 
T
-
 
V
-
 
T
I
 
V
I
 
I
M
 
Q
N
 
N
G
 
G
V
 
V
K
 
V
Y
 
L
F
 
-
Q
 
-
F
 
-
D
 
-
K
 
-
G
 
-
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-
A
 
Q
D
 
N
W
 
H
N
 
T
K
 
T
R
 
I
V
 
L
A
 
G
A
 
T
S
 
T
K
 
E
F
 
W
S
 
I
K
 
G
Y
 
F
P
 
P
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Q
F
 
V
G
 
K
K
 
K
P
 
H
T
 
G
K
 
A
G
 
G
H
 
P
I
 
I
C
 
I
L
 
L
Q
|
Q
D
 
S
H
 
H
N
 
G
D
 
D
-
 
P
-
 
S
-
 
E
L
 
P
V
 
I
S
 
S
F
 
F
R
 
R
N
 
N
I
 
I
K
 
W
I
 
I
R
 
R

Query Sequence

>4590561_54_263
GWKLLFDGKTTDGWRNYKKEGVSDGWTIKDGVLSRSAKGAGDIITDDQFGFFELSLEYRI
SPEGNSGLMFHVTEEEKTPWMTGPEVQIQDNVDGHDPQKAGWLYQLYKPATPKWMIEAEK
AGKKVTPAVVDATRPAGDWNHLFLRVGPDRSQIIMNGVKYFQFDKGSADWNKRVAASKFS
KYPSFGKPTKGHICLQDHNDLVSFRNIKIR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory