SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 4592619_38_216 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
34% identity, 63% coverage: 4:116/179 of query aligns to 46:165/240 of 4qhzC

query
sites
4qhzC
L
 
V
L
 
L
F
 
F
N
 
D
G
 
G
K
 
K
D
 
D
L
 
L
S
 
S
G
 
A
W
 
W
Q
 
E
H
 
S
-
 
V
-
 
K
-
 
G
-
 
G
S
 
A
G
 
A
N
 
E
W
 
W
K
 
D
V
 
V
E
 
H
D
 
D
G
 
G
I
 
V
I
 
F
S
 
T
R
 
V
A
 
N
G
 
K
K
 
K
G
 
K
G
 
G
S
 
D
L
 
I
V
 
-
Y
 
-
E
 
Q
T
 
T
E
 
K
H
 
Q
V
 
K
P
 
F
D
 
N
N
 
D
F
 
F
E
 
Q
L
 
M
K
 
H
F
 
I
E
 
E
W
 
W
K
 
Q
V
 
V
-
 
P
-
 
T
-
 
N
-
 
I
-
 
T
G
 
G
E
 
E
G
 
S
S
 
Q
-
 
S
-
 
R
-
 
G
N
|
N
S
|
S
G
 
G
V
 
I
Y
 
F
Y
 
L
R
 
Q
P
 
-
G
 
G
Q
 
M
Y
 
Y
E
|
E
Y
 
V
Q
|
Q
I
 
V
L
 
L
D
 
D
-
 
C
-
 
Y
-
 
N
N
 
N
N
 
P
K
 
T
H
 
Y
V
 
V
D
 
N
G
 
G
K
 
Q
N
 
-
P
 
-
R
 
-
T
 
-
S
 
-
A
 
T
A
 
G
S
 
S
I
 
I
Y
 
Y
F
 
K
C
 
Q
L
 
S
P
 
I
P
 
P
S
 
L
H
 
A
D
 
N
A
 
A
T
 
M
R
 
R
P
 
K
V
 
P
G
 
G
D
 
E
W
 
W
N
 
N
T
 
V
G
 
Y
R
 
D
I
 
I
V
 
I

Sites not aligning to the query:

Query Sequence

>4592619_38_216
GFKLLFNGKDLSGWQHSGNWKVEDGIISRAGKGGSLVYETEHVPDNFELKFEWKVGEGSN
SGVYYRPGQYEYQILDNNKHVDGKNPRTSAASIYFCLPPSHDATRPVGDWNTGRIVCQGT
VIQHWLNGEKVIDLDYTDPRYAWHVELLANRGGDLADRGAKLSLQDHGDPVWYRGIKMR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory