SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 4594548_352_539 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
29% identity, 65% coverage: 4:126/188 of query aligns to 46:169/240 of 4qhzC

query
sites
4qhzC
L
 
V
L
 
L
F
 
F
N
 
D
G
 
G
K
 
K
D
 
D
Y
 
L
S
 
S
G
 
A
W
 
W
K
 
E
C
 
S
N
 
V
N
 
K
G
 
G
K
 
G
P
 
A
I
 
A
A
 
E
A
 
W
P
 
D
I
 
V
E
 
H
D
 
D
G
 
G
A
 
V
L
 
F
V
 
T
P
 
V
Y
 
N
K
 
K
S
 
K
G
 
K
G
 
G
Y
 
D
L
 
I
I
 
Q
V
 
T
Y
 
K
D
 
Q
K
 
K
P
 
-
F
 
F
A
 
N
D
 
D
F
 
F
K
 
Q
F
 
M
K
 
H
C
 
I
D
 
E
V
 
W
K
 
Q
M
 
V
P
 
P
E
 
T
E
 
N
C
 
I
-
 
T
-
 
G
-
 
E
-
 
S
-
 
Q
-
 
S
-
 
R
-
 
G
N
|
N
S
|
S
G
 
G
I
 
I
F
 
F
F
 
-
R
 
-
V
 
-
G
 
-
D
 
-
L
 
-
K
 
-
N
 
-
P
 
-
V
 
L
Q
 
Q
T
 
G
G
 
M
F
 
Y
E
|
E
A
 
V
Q
|
Q
V
 
V
L
 
L
T
 
D
G
 
C
D
 
Y
G
 
N
T
 
N
G
 
P
M
 
T
H
 
Y
-
 
V
-
 
N
-
 
G
D
 
Q
F
 
T
G
 
G
A
 
S
I
 
I
Y
 
Y
D
 
K
L
 
Q
V
 
S
A
 
I
P
 
P
S
 
L
V
 
A
N
 
N
R
 
A
A
 
M
S
 
R
K
 
K
P
 
P
G
 
G
E
 
E
W
 
W
T
 
N
N
 
V
L
 
Y
E
 
D
I
 
I
T
 
I
C
 
Y
Q
 
T
G
 
A
P
 
P

Sites not aligning to the query:

Query Sequence

>4594548_352_539
GWKLLFNGKDYSGWKCNNGKPIAAPIEDGALVPYKSGGYLIVYDKPFADFKFKCDVKMPE
ECNSGIFFRVGDLKNPVQTGFEAQVLTGDGTGMHDFGAIYDLVAPSVNRASKPGEWTNLE
ITCQGPHVSVAVNGKVVAKLNADEWTEPGKRLDGSSHKFKDAVKDFPRKGYLGFQDHGHK
VWYKNVKL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory