SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 4594702_67_283 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
25% identity, 98% coverage: 5:217/217 of query aligns to 47:238/240 of 4qhzC

query
sites
4qhzC
L
 
L
F
 
F
N
 
D
G
 
G
E
 
K
D
 
D
F
 
L
T
 
S
G
 
A
W
 
W
K
 
E
V
 
S
P
 
V
E
 
K
G
 
G
D
 
G
N
 
A
G
 
A
H
 
E
W
 
W
K
 
D
V
 
V
V
 
H
E
 
D
G
 
G
V
 
V
I
 
F
D
 
T
Y
 
V
D
 
N
A
 
K
Q
 
K
S
 
-
E
 
-
A
 
-
K
 
K
G
 
G
D
 
D
K
 
-
N
 
-
L
 
I
W
 
Q
T
 
T
E
 
K
K
 
Q
E
 
K
Y
 
F
G
 
N
D
 
D
F
 
F
I
 
Q
L
 
M
S
 
H
L
 
I
E
 
E
W
 
W
R
 
Q
I
 
-
K
 
-
E
 
-
T
 
-
T
 
-
G
 
-
L
 
-
Y
 
-
K
 
-
V
 
V
P
 
P
I
 
T
V
 
N
L
 
I
A
 
T
D
 
G
G
 
E
S
 
S
E
 
Q
L
 
S
K
 
R
D
 
-
A
 
-
N
 
-
G
 
-
N
 
-
V
 
-
I
 
-
T
 
-
V
 
-
E
 
-
L
 
-
P
 
-
N
 
-
A
 
G
D
x
N
S
|
S
G
 
G
I
 
I
Y
 
F
L
 
L
R
 
Q
G
 
G
T
 
M
P
 
Y
K
x
E
A
 
V
Q
|
Q
V
 
V
N
 
-
I
 
L
W
 
D
C
 
C
W
 
Y
P
 
-
I
 
-
G
 
-
S
 
-
G
 
-
E
 
N
V
 
N
Y
 
P
S
 
T
Y
 
Y
R
 
V
R
 
N
N
 
G
Q
 
Q
S
 
T
V
 
G
S
 
S
P
 
-
E
 
-
V
 
I
R
 
Y
A
 
K
G
 
Q
V
 
S
T
 
I
P
 
P
K
 
L
T
 
A
N
 
N
A
 
A
D
 
M
K
 
R
P
 
K
V
 
P
G
 
G
E
 
E
W
 
W
N
 
N
K
 
V
F
 
Y
I
 
D
I
 
I
I
 
I
M
 
Y
V
 
T
K
 
A
D
 
P
R
 
T
L
 
F
-
 
K
-
 
E
-
 
D
-
 
G
-
 
S
-
 
Y
-
 
R
-
 
T
-
 
H
-
 
P
-
 
T
T
 
V
V
 
T
I
 
V
L
 
I
N
 
Q
N
 
N
E
 
G
M
 
V
V
 
V
L
 
L
E
 
Q
N
 
N
A
 
H
Q
 
T
-
 
T
-
 
I
-
 
L
-
 
G
-
 
T
-
 
T
-
 
E
-
 
W
-
 
I
-
 
G
L
 
F
P
 
P
D
 
Q
V
 
V
P
 
K
E
 
K
K
 
H
-
 
G
-
 
A
G
 
G
P
 
P
I
 
I
A
 
I
F
 
L
Q
|
Q
H
 
S
H
 
H
G
 
G
G
 
D
K
 
-
L
 
-
K
 
-
D
 
-
G
 
-
T
 
-
F
 
-
S
 
-
P
 
-
A
 
P
S
 
S
S
 
E
L
 
P
M
 
I
Q
 
S
F
 
F
R
 
R
N
 
N
I
 
I
Y
 
W
I
 
I
K
 
R

Query Sequence

>4594702_67_283
GYTSLFNGEDFTGWKVPEGDNGHWKVVEGVIDYDAQSEAKGDKNLWTEKEYGDFILSLEW
RIKETTGLYKVPIVLADGSELKDANGNVITVELPNADSGIYLRGTPKAQVNIWCWPIGSG
EVYSYRRNQSVSPEVRAGVTPKTNADKPVGEWNKFIIIMVKDRLTVILNNEMVLENAQLP
DVPEKGPIAFQHHGGKLKDGTFSPASSLMQFRNIYIK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory