SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 4613131_15_203 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
27% identity, 79% coverage: 4:152/189 of query aligns to 47:172/240 of 4qhzC

query
sites
4qhzC
L
 
L
F
 
F
N
 
D
G
 
G
K
 
K
D
 
D
L
 
L
S
 
S
G
 
A
W
 
W
V
 
E
D
 
S
V
 
V
N
 
K
T
 
G
S
 
G
K
 
A
A
 
A
T
 
E
W
 
W
K
 
D
V
 
V
K
 
H
D
 
D
G
 
G
L
 
V
L
 
F
I
 
T
C
 
V
S
 
N
G
 
K
K
 
K
P
 
K
I
 
-
G
 
G
V
 
D
M
 
I
R
 
Q
S
 
T
E
 
K
K
 
Q
Q
 
K
Y
 
F
E
 
N
N
 
D
F
 
F
I
 
Q
L
 
M
Q
 
H
I
 
I
E
 
E
W
 
W
R
 
Q
-
 
V
-
 
P
-
 
T
-
 
N
-
 
I
-
 
T
-
 
G
H
 
E
M
 
S
K
 
Q
E
 
S
G
 
R
G
 
G
N
|
N
S
|
S
G
 
G
V
 
I
F
 
F
I
 
L
W
 
-
S
 
-
E
 
-
G
 
-
T
 
-
G
 
-
Y
 
-
N
 
-
N
 
-
K
 
-
P
 
-
L
 
-
P
 
-
K
 
Q
G
 
G
V
 
M
-
 
Y
E
|
E
V
 
V
Q
|
Q
M
 
V
L
 
L
E
 
D
L
 
C
Q
 
Y
W
 
-
S
 
-
K
 
-
I
 
-
H
 
-
K
 
-
R
 
N
I
 
N
E
 
P
A
 
T
Y
 
Y
V
 
V
S
 
N
G
 
G
E
 
Q
L
 
T
F
 
-
G
 
G
S
 
S
M
 
I
G
 
Y
L
 
K
K
 
Q
T
 
S
S
 
I
P
 
P
D
 
-
N
 
-
P
 
-
R
 
-
G
 
-
T
 
-
R
 
-
S
 
-
K
 
-
S
 
-
V
 
L
E
 
A
M
 
N
R
 
A
C
 
M
K
 
R
G
 
K
V
 
P
G
 
G
E
 
E
W
 
W
N
 
N
Q
 
V
Y
 
Y
T
 
D
V
 
I
V
 
I
A
 
Y
V
 
T
D
 
A
G
 
P
T
 
T
V
 
F
K
 
K

Sites not aligning to the query:

Query Sequence

>4613131_15_203
FKKLFNGKDLSGWVDVNTSKATWKVKDGLLICSGKPIGVMRSEKQYENFILQIEWRHMKE
GGNSGVFIWSEGTGYNNKPLPKGVEVQMLELQWSKIHKRIEAYVSGELFGSMGLKTSPDN
PRGTRSKSVEMRCKGVGEWNQYTVVAVDGTVKLAINGKFVNGLSRSEIKKGYLCLEAEGS
EIHFRNIRI

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory