SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 4614159_234_440 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
25% identity, 98% coverage: 5:207/207 of query aligns to 47:238/240 of 4qhzC

query
sites
4qhzC
L
 
L
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-
L
 
-
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-
E
 
S
L
 
V
Q
 
K
A
 
G
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G
A
 
A
D
 
A
E
 
E
S
 
-
M
 
-
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-
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-
H
 
-
W
 
W
S
 
D
V
 
V
T
 
H
D
 
D
K
 
-
G
 
G
E
 
V
L
 
F
F
 
T
F
 
V
D
 
N
G
 
K
K
 
K
K
 
K
G
 
G
G
 
-
H
 
-
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D
L
 
I
A
 
Q
T
 
T
L
 
K
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Q
Q
 
K
Y
 
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N
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D
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F
E
 
Q
F
 
M
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H
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I
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E
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W
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Q
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P
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N
-
 
I
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T
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G
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E
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S
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Q
-
 
S
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G
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x
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S
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G
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I
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F
L
 
L
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G
L
 
M
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Y
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x
E
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V
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Q
I
 
V
W
 
L
D
 
D
P
 
C
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Y
D
 
N
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N
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T
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Y
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V
L
 
N
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G
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Q
H
 
-
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-
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G
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L
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M
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G
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E
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W
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A
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V
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T
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V
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I
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Q
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N
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G
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V
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V
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L
V
 
Q
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N
N
 
H
A
 
T
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T
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I
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L
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G
L
 
T
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T
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E
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W
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L
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D
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P
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S
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E
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P
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I
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N
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I
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W
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I
R
 
R

Query Sequence

>4614159_234_440
GFTQLFNGKDLTNWKGLLDRPFDRPHKRKTLKADKLKELQAKADESMKKHWSVTDKGELF
FDGKKGGHSLATLKQYKDFEFHVSWKINQNGDSGIYLRGLPQVQIWDPSDQKVQKLGAHK
GSGALWNNPKEGKWPLVKADKPTGEWNHFFIRMIGDRVSIWTNGKQTVDNAPLYNLWEKG
KAPIPVMEQIELQCHGHPTWFKNIYIR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory