SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 4614844_78_263 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
45% identity, 100% coverage: 1:186/186 of query aligns to 44:237/240 of 4qhzC

query
sites
4qhzC
A
 
A
T
 
I
V
 
V
L
 
L
F
 
F
D
 
D
G
 
G
S
 
K
N
 
D
L
 
L
D
 
S
N
 
A
F
 
W
K
 
E
N
 
S
K
 
V
K
 
K
-
 
G
-
 
G
-
 
A
-
 
A
-
 
E
W
 
W
K
 
D
L
 
V
V
 
H
D
 
D
G
 
G
A
 
V
M
 
F
Q
 
T
V
 
V
V
 
N
P
 
K
K
 
K
A
 
K
R
 
G
D
 
D
Q
 
I
F
 
Q
T
 
T
N
 
K
D
 
Q
K
 
K
F
 
F
G
 
N
D
 
D
I
 
F
H
 
Q
L
 
M
H
 
H
V
 
I
E
 
E
W
 
W
M
 
Q
V
 
V
P
 
P
A
 
T
G
 
N
M
 
I
K
 
T
G
 
G
W
 
E
H
 
S
Q
 
Q
Q
 
S
Q
 
R
G
 
G
N
|
N
S
|
S
G
 
G
V
 
I
F
 
F
L
 
L
M
 
Q
G
 
G
R
 
M
Y
 
Y
E
|
E
V
 
V
Q
|
Q
V
 
V
L
 
L
N
 
D
C
 
C
W
 
Y
A
 
N
N
 
N
R
 
P
T
 
T
Y
 
Y
P
 
V
D
 
N
G
 
G
M
 
Q
T
 
T
G
 
G
A
 
S
I
 
I
Y
 
Y
G
 
K
Q
 
Q
Q
 
S
P
 
I
P
 
P
A
 
L
F
 
A
N
 
N
V
 
A
C
 
M
R
 
R
K
 
K
P
 
P
G
 
G
E
 
E
W
 
W
N
 
N
S
 
V
Y
 
Y
D
 
D
I
 
I
H
 
I
F
 
Y
K
 
T
A
 
A
P
 
P
V
 
T
F
 
F
-
 
K
E
 
E
G
 
D
K
 
G
K
 
S
L
 
Y
V
 
R
T
 
T
P
 
H
A
 
P
Y
 
T
I
 
V
T
 
T
V
 
V
I
 
I
F
 
Q
N
 
N
G
 
G
V
 
V
K
 
V
I
 
L
H
 
Q
D
 
N
N
 
H
Y
 
T
E
 
T
I
 
I
K
 
L
G
 
G
G
 
T
T
 
T
H
 
E
Y
 
W
R
 
I
R
 
G
V
 
F
A
 
P
S
 
Q
Y
 
V
S
 
K
A
 
K
H
 
H
G
 
G
P
 
-
K
 
A
D
 
G
H
 
P
I
 
I
R
 
I
L
 
L
Q
|
Q
D
 
S
H
 
H
G
 
G
N
 
D
P
 
P
N
 
S
-
 
E
-
 
P
-
 
I
M
 
S
F
 
F
R
 
R
N
 
N
I
 
I
W
 
W
V
 
I

Query Sequence

>4614844_78_263
ATVLFDGSNLDNFKNKKWKLVDGAMQVVPKARDQFTNDKFGDIHLHVEWMVPAGMKGWHQ
QQGNSGVFLMGRYEVQVLNCWANRTYPDGMTGAIYGQQPPAFNVCRKPGEWNSYDIHFKA
PVFEGKKLVTPAYITVIFNGVKIHDNYEIKGGTHYRRVASYSAHGPKDHIRLQDHGNPNM
FRNIWV

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory