SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 4615506_175_363 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
29% identity, 87% coverage: 26:189/189 of query aligns to 75:238/240 of 4qhzC

query
sites
4qhzC
I
 
V
N
 
N
G
 
K
R
 
K
K
 
K
G
 
G
K
 
-
T
 
-
N
 
-
N
 
D
I
 
I
S
 
Q
T
 
T
K
 
K
K
 
Q
H
 
K
Y
 
F
K
 
N
D
 
D
I
 
F
E
 
Q
F
 
M
H
 
H
L
 
I
E
 
E
F
 
W
M
 
Q
L
 
V
A
 
P
-
 
T
-
 
N
-
 
I
-
 
T
-
 
G
-
 
E
-
 
S
-
 
Q
E
 
S
K
 
R
S
 
G
N
|
N
A
x
S
G
 
G
V
 
I
Y
 
F
F
 
L
M
 
Q
G
 
G
R
 
M
Y
 
Y
E
|
E
I
 
V
Q
|
Q
I
 
V
L
 
L
D
 
D
S
 
C
Y
 
Y
G
 
N
K
 
N
D
 
P
K
 
T
W
 
Y
G
 
V
S
 
N
G
 
G
D
 
Q
M
 
T
G
 
G
G
 
S
L
 
I
Y
 
Y
Q
 
K
R
 
Q
W
 
S
P
 
I
P
 
P
A
 
L
R
 
-
G
 
-
A
 
-
G
 
-
V
 
-
A
 
-
A
 
-
K
 
-
V
 
A
N
 
N
A
 
A
A
 
M
K
 
R
K
 
K
P
 
P
G
 
G
E
 
E
W
 
W
Q
 
N
T
 
V
M
 
Y
D
 
D
A
 
I
V
 
I
F
 
Y
R
 
T
A
 
A
P
 
P
R
 
T
F
 
F
D
 
K
E
 
E
K
 
D
T
 
G
G
 
S
K
 
Y
R
 
R
I
 
T
S
 
H
Q
 
P
A
 
T
Y
 
V
F
 
-
K
 
-
E
 
T
V
 
V
K
 
I
I
 
Q
N
 
N
G
 
G
Q
 
V
V
 
V
V
 
L
Q
 
Q
E
 
N
N
 
H
L
 
T
Y
 
T
A
 
I
V
 
L
G
 
G
P
 
T
T
 
T
R
 
E
S
 
W
S
 
I
Q
 
G
F
 
F
N
 
P
D
 
Q
-
 
V
-
 
K
E
 
K
A
 
H
P
 
G
K
 
A
G
 
G
P
 
P
I
 
I
M
 
I
I
 
L
Q
|
Q
G
 
-
D
 
S
H
 
H
G
 
G
-
 
D
-
 
P
-
 
S
-
 
E
P
 
P
I
 
I
A
 
S
I
 
F
R
 
R
K
 
N
M
 
I
T
 
W
V
 
I
K
 
R

Query Sequence

>4615506_175_363
GWENIASAKAKRRKLIVTEEGEGMLINGRKGKTNNISTKKHYKDIEFHLEFMLAEKSNAG
VYFMGRYEIQILDSYGKDKWGSGDMGGLYQRWPPARGAGVAAKVNAAKKPGEWQTMDAVF
RAPRFDEKTGKRISQAYFKEVKINGQVVQENLYAVGPTRSSQFNDEAPKGPIMIQGDHGP
IAIRKMTVK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory