SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 4616236_34_216 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
30% identity, 92% coverage: 15:183/183 of query aligns to 66:238/240 of 4qhzC

query
sites
4qhzC
W
 
W
T
 
D
F
 
V
K
 
H
D
 
D
G
 
G
V
 
V
A
 
F
T
 
T
A
 
V
A
 
N
K
 
K
E
 
K
-
 
K
-
 
G
H
 
D
I
 
I
V
 
Q
T
 
T
S
 
K
M
 
Q
P
 
K
V
 
F
N
 
N
N
 
D
F
 
F
K
 
Q
A
 
M
H
 
H
V
 
I
E
 
E
F
 
W
K
 
Q
V
 
V
V
 
P
N
 
T
N
 
N
P
 
I
N
 
T
K
 
G
K
 
E
K
 
S
N
 
Q
K
 
-
T
 
-
R
 
-
G
 
-
N
 
S
N
 
R
G
 
G
N
|
N
S
|
S
G
 
G
V
 
I
Y
 
F
I
 
L
Q
 
Q
Q
 
G
R
 
M
Y
 
Y
E
|
E
I
 
V
Q
|
Q
I
 
V
L
 
L
N
 
D
S
 
C
F
 
Y
G
 
-
H
 
N
D
 
N
D
 
P
D
 
T
Y
 
Y
Q
 
V
K
 
N
Y
 
G
D
 
Q
C
 
T
A
 
G
S
 
S
I
 
I
Y
 
Y
K
 
K
F
 
Q
K
 
S
K
 
I
P
 
P
D
 
L
H
 
A
I
 
N
V
 
A
C
 
M
K
 
R
P
 
K
E
 
P
G
 
G
E
 
E
W
 
W
Q
 
N
T
 
V
Y
 
Y
D
 
D
I
 
I
E
 
I
F
 
Y
Y
 
T
A
 
A
A
 
P
K
 
T
W
 
F
Q
 
K
G
 
E
K
 
D
K
 
G
K
 
S
I
 
Y
-
 
R
A
 
T
N
 
H
A
 
P
R
 
T
L
 
V
T
 
T
L
 
V
I
 
I
H
 
Q
N
 
N
G
 
G
V
 
V
K
 
V
V
 
L
H
 
Q
D
 
N
N
 
H
V
 
T
E
 
T
L
 
I
P
 
L
N
 
G
K
 
T
T
 
T
-
 
E
-
 
W
-
 
I
G
 
G
H
 
F
G
 
P
K
 
Q
K
 
V
E
 
K
S
 
K
P
 
H
E
 
G
P
 
A
L
 
G
P
 
P
L
 
I
R
 
I
L
 
L
Q
|
Q
Y
 
S
H
 
H
-
 
G
-
 
D
-
 
P
S
 
S
N
 
E
P
 
P
V
 
I
Q
 
S
F
 
F
R
 
R
N
 
N
V
 
I
W
 
W
I
 
I
K
 
R

Query Sequence

>4616236_34_216
KNLVNEQNPDQKLSWTFKDGVATAAKEHIVTSMPVNNFKAHVEFKVVNNPNKKKNKTRGN
NGNSGVYIQQRYEIQILNSFGHDDDYQKYDCASIYKFKKPDHIVCKPEGEWQTYDIEFYA
AKWQGKKKIANARLTLIHNGVKVHDNVELPNKTGHGKKESPEPLPLRLQYHSNPVQFRNV
WIK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory