SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 4908012_29_247 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
25% identity, 100% coverage: 1:219/219 of query aligns to 37:238/240 of 4qhzC

query
sites
4qhzC
G
 
G
F
 
F
T
 
T
A
 
A
-
 
P
-
 
S
-
 
D
-
 
A
-
 
I
-
 
V
L
 
L
F
 
F
N
 
D
G
 
G
K
 
K
D
 
D
L
 
L
T
 
S
G
 
A
W
 
W
K
 
E
G
 
-
H
 
-
T
 
-
T
 
-
M
 
-
T
 
-
E
 
-
R
 
-
A
 
-
K
 
-
Q
 
-
K
 
-
P
 
-
E
 
-
D
 
-
L
 
-
A
 
-
K
 
-
L
 
-
Q
 
-
A
 
-
T
 
-
R
 
S
T
 
V
K
 
K
T
 
G
A
 
G
F
 
A
E
 
A
H
 
E
W
 
W
K
 
D
L
 
V
V
 
H
D
 
D
G
 
G
A
 
V
I
 
F
H
 
T
C
 
V
D
 
N
G
 
K
K
 
K
G
 
K
G
 
G
V
 
-
S
 
D
L
 
I
V
 
Q
T
 
T
E
 
K
K
 
Q
D
 
K
Y
 
F
G
 
N
N
 
D
F
 
F
E
 
Q
L
 
M
L
 
H
V
 
I
D
 
E
W
 
W
K
 
Q
I
 
V
-
 
P
-
 
T
-
 
N
-
 
I
-
 
T
-
 
G
-
 
E
-
 
S
A
 
Q
K
 
S
K
 
R
G
 
G
D
x
N
S
|
S
G
 
G
L
 
I
Y
 
F
L
 
L
R
 
Q
G
 
G
Q
 
M
P
 
Y
Q
x
E
V
 
V
Q
|
Q
I
 
V
W
 
L
D
 
D
S
 
-
D
 
-
N
 
-
A
 
-
G
 
-
G
 
-
G
 
-
R
 
-
I
 
-
E
 
-
D
 
-
P
 
-
G
 
-
T
 
-
G
 
-
S
 
-
G
 
-
G
 
-
L
 
C
W
 
Y
N
 
N
N
 
N
P
 
P
L
 
T
P
 
Y
P
 
V
N
 
N
A
 
G
E
 
Q
K
 
T
S
 
G
A
 
S
D
 
I
V
 
Y
A
 
K
L
 
Q
R
 
-
L
 
-
Q
 
-
E
 
-
G
 
-
R
 
-
K
 
-
V
 
-
G
 
-
K
 
S
V
 
I
P
 
P
L
 
L
T
 
A
K
 
N
A
 
A
D
 
M
K
 
R
P
 
K
V
 
P
G
 
G
E
 
E
W
 
W
N
 
N
T
 
V
F
 
Y
H
 
D
I
 
I
T
 
I
V
 
Y
I
 
T
G
 
A
-
 
P
-
 
T
-
 
F
-
 
K
-
 
E
-
 
D
-
 
G
-
 
S
-
 
Y
-
 
R
-
 
T
-
 
H
D
 
P
E
 
T
V
 
V
T
 
T
V
 
V
K
 
I
L
 
Q
N
 
N
G
 
G
T
 
V
L
 
V
V
 
L
V
 
Q
D
 
N
K
 
H
A
 
T
K
 
T
L
 
I
L
 
L
N
 
G
F
 
T
W
 
T
E
 
E
-
 
W
R
 
I
G
 
G
K
 
F
P
 
P
V
 
Q
P
 
V
E
 
K
-
 
K
-
 
H
-
 
G
T
 
A
G
 
G
P
 
P
I
 
I
E
 
I
L
 
L
Q
|
Q
F
 
S
H
 
H
G
 
G
D
 
D
-
 
P
-
 
S
-
 
E
P
 
P
L
 
I
W
 
S
F
 
F
K
 
R
N
 
N
I
 
I
Y
 
W
I
 
I
K
 
R

Query Sequence

>4908012_29_247
GFTALFNGKDLTGWKGHTTMTERAKQKPEDLAKLQATRTKTAFEHWKLVDGAIHCDGKGG
VSLVTEKDYGNFELLVDWKIAKKGDSGLYLRGQPQVQIWDSDNAGGGRIEDPGTGSGGLW
NNPLPPNAEKSADVALRLQEGRKVGKVPLTKADKPVGEWNTFHITVIGDEVTVKLNGTLV
VDKAKLLNFWERGKPVPETGPIELQFHGDPLWFKNIYIK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory