SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 4909907_81_246 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
26% identity, 95% coverage: 9:166/166 of query aligns to 81:238/240 of 4qhzC

query
sites
4qhzC
N
 
D
L
 
I
I
 
Q
T
 
T
K
 
K
E
 
Q
E
 
K
F
 
F
G
 
N
D
 
D
C
 
F
E
 
Q
I
 
M
H
 
H
V
 
I
E
 
E
F
 
W
L
 
Q
I
 
V
A
 
P
K
 
T
G
 
N
-
 
I
-
 
T
-
 
G
-
 
E
-
 
S
-
 
Q
-
 
S
-
 
R
S
 
G
N
|
N
A
x
S
G
 
G
V
 
I
K
 
F
F
 
L
H
 
Q
E
 
G
V
 
M
Y
 
Y
E
|
E
I
 
V
Q
|
Q
I
 
V
Q
 
L
D
 
D
D
 
C
Y
 
Y
G
 
N
K
 
N
K
 
P
N
 
T
L
 
Y
D
 
V
G
 
N
S
 
G
H
 
Q
M
 
T
G
 
G
G
 
S
I
 
I
Y
 
Y
P
 
K
R
 
Q
A
 
S
N
 
I
L
 
-
E
 
-
R
 
-
G
 
-
G
 
-
Y
 
-
L
 
-
D
 
-
K
 
-
G
 
-
V
 
-
P
 
-
P
 
P
K
 
L
V
 
A
N
 
N
A
 
A
A
 
M
K
 
R
P
 
K
F
 
P
G
 
G
E
 
E
W
 
W
Q
 
N
T
 
V
L
 
Y
E
 
D
A
 
I
T
 
I
W
 
Y
K
 
T
S
 
A
P
 
P
R
 
T
F
 
F
N
 
K
E
 
E
K
 
D
G
 
G
E
 
S
K
 
Y
S
 
R
A
 
T
S
 
H
A
 
P
L
 
-
V
 
T
V
 
V
K
 
T
A
 
V
T
 
I
L
 
Q
N
 
N
G
 
G
Q
 
V
V
 
V
I
 
L
H
 
Q
E
 
N
N
 
H
A
 
T
E
 
T
V
 
I
-
 
L
-
 
G
K
 
T
T
 
T
P
 
E
T
 
W
G
 
I
G
 
G
N
 
F
W
 
P
G
 
Q
K
 
V
K
 
K
E
 
K
T
 
H
P
 
G
T
 
A
G
 
G
A
 
P
F
 
I
M
 
I
L
 
L
Q
|
Q
T
 
S
D
 
-
H
 
H
G
 
G
-
 
D
-
 
P
-
 
S
-
 
E
P
 
P
T
 
I
A
 
S
F
 
F
R
 
R
N
 
N
V
 
I
R
 
W
I
 
I
R
 
R

Query Sequence

>4909907_81_246
NGETGRLPNLITKEEFGDCEIHVEFLIAKGSNAGVKFHEVYEIQIQDDYGKKNLDGSHMG
GIYPRANLERGGYLDKGVPPKVNAAKPFGEWQTLEATWKSPRFNEKGEKSASALVVKATL
NGQVIHENAEVKTPTGGNWGKKETPTGAFMLQTDHGPTAFRNVRIR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory