Comparing 5208228 FitnessBrowser__PV4:5208228 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4rqoB Crystal structure of l-serine dehydratase from legionella pneumophila (see paper)
49% identity, 99% coverage: 2:450/455 of query aligns to 3:445/448 of 4rqoB
Sites not aligning to the query:
2iafA Crystal structure of a fragment (residues 11 to 161) of l-serine dehydratase from legionella pneumophila
41% identity, 31% coverage: 16:156/455 of query aligns to 1:138/140 of 2iafA
>5208228 FitnessBrowser__PV4:5208228
MVSAFDIFKIGVGPSSSHTVGPMKAAKGFVDDLRQRGELLSITSVKVDIYGSLSLTGKGH
HTDSAIIMGLAGNSPETVDIDLTPEFIRQVAMTSCLPLGTEGHGVDFPPEAVVFHPEALA
LHENGMTLSAYVGQQCVYHKTYYSIGGGFIVDEEHFGMTAANEVVLPYPFANAEELLDLC
QETGMSISAIMMANERALHSEAHIAEGFEAVWHTMKEAIERGCHTEGVLAGPLRVPRRAP
ALFRQLATGERLSADPMMIVDWVNMFALAVSEENAAGGRVVTSPTNGAAGIIPAVLAYFD
KFIQPVGPKEYSRYFLAAAAIGGLYKRNASISGAEVGCQGEVGVACSMAAAGLAELMGGN
PAQVCIAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAINSARMALRRNSEPRVSL
DKVIATMYETGKDMHVKYRETSQGGLAIKVTSICA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory