Comparing 5208392 FitnessBrowser__PV4:5208392 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
5ys3A 1.8 angstrom crystal structure of succinate-acetate permease from citrobacter koseri (see paper)
63% identity, 98% coverage: 4:187/188 of query aligns to 1:184/188 of 5ys3A
5ys8A 2.8 angstrom crystal structure of succinate-acetate permease from citrobacter koseri (see paper)
63% identity, 96% coverage: 5:185/188 of query aligns to 1:181/182 of 5ys8A
P0AC98 Succinate-acetate/proton symporter SatP; Succinate-acetate transporter protein from Escherichia coli (strain K12) (see paper)
61% identity, 98% coverage: 2:185/188 of query aligns to 3:186/188 of P0AC98
P41943 Glyoxylate pathway regulator from Yarrowia lipolytica (strain CLIB 122 / E 150) (Yeast) (Candida lipolytica) (see paper)
31% identity, 91% coverage: 2:173/188 of query aligns to 74:251/270 of P41943
Sites not aligning to the query:
>5208392 FitnessBrowser__PV4:5208392
MSTKLANPAPLGLMGFGMTTVLLNIHNAGFFAIDAMILAMGIFYGGLGQVLVGMMCFKRG
DTFGTTAFTSYGLFWLTLVGLIMLPKLGLAAASPSHFMGWYLSLWGLFTAFMFVGSLRYP
RAKQVVFGSLTILFFLLAARDFTGSELIGMIAGFEGIFCGASAIYFAMAQVLNQEYGRVI
LPIGEVKA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory