Comparing 5208581 FitnessBrowser__PV4:5208581 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
Q6LX42 Sodium/alanine symporter AgcS; Alanine permease; Alanine/glycine:cation symporter from Methanococcus maripaludis (strain S2 / LL) (see paper)
36% identity, 89% coverage: 11:450/492 of query aligns to 5:451/453 of Q6LX42
6csfM Crystal structure of sodium/alanine symporter agcs with d-alanine bound (see paper)
36% identity, 86% coverage: 21:443/492 of query aligns to 1:423/431 of 6csfM
6cseM Crystal structure of sodium/alanine symporter agcs with l-alanine bound (see paper)
36% identity, 86% coverage: 21:443/492 of query aligns to 1:423/431 of 6cseM
>5208581 FitnessBrowser__PV4:5208581
MFESVLNLVDSTINAVNGMLWGSVLIYVLVAAGVLFTLRLGFIQLRMFGHGSKLVLQGRE
KTNGISSFQVFCTSMAARVGTGNMAGVAVAITVGGAGAVFWMWLIALLGMATAFIESTLA
QVYKVKDSDGQYRGGPAYYMEQGLGKRWMGSLFSVLLIIAFGFAFNAAQANTMTDALNNA
FGLDKTMVGLVIVAVAAYIISGGLKKVAKASELIVPVMAVAYLAIALIVLVMNLEQVPAA
LAYIVKSAFGWEEAAGGAMGAMMAGIARGLFSNEAGMGSAANIAASASPNPNHPASQGFV
QMIGVFVDTIVICSATAAIILLSGVLDAPGEQKGIGLLQLALTNEVGGWAAYFVAFAIIL
FCFSSIIANYSYAESNIMFLSRSKKVLYIFRALVLAMVMAGSVASLQLVWNFADVSMGLM
ALVNIAAIVMLSKVAFAVIKDYEVQLKAGKVPTFDAAHFPELNGLDEKIWKGKPSADALA
KEEGKSIAVPEV
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory