SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 5208608 Shew_1119 glucose/galactose transporter (RefSeq) to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P11551 L-fucose-proton symporter; 6-deoxy-L-galactose permease; L-fucose permease; L-fucose-H(+) symport protein from Escherichia coli (strain K12) (see 3 papers)
28% identity, 89% coverage: 2:372/418 of query aligns to 29:394/438 of P11551

query
sites
P11551
A
 
A
I
 
L
V
 
L
A
 
C
G
 
S
L
 
L
F
 
F
F
 
F
I
 
L
L
x
W
G
 
A
F
 
V
A
 
A
T
 
N
W
 
N
L
 
L
N
 
N
G
x
D
S
 
I
L
 
L
M
 
L
P
 
P
Y
 
Q
L
 
F
K
 
Q
Q
 
Q
I
 
A
L
 
F
Q
 
T
L
 
L
T
 
T
P
 
N
L
 
F
Q
 
Q
A
 
A
S
 
G
L
 
L
I
 
I
L
 
Q
F
 
S
S
 
A
F
 
F
Y
 
Y
I
 
F
A
 
G
V
 
Y
T
 
F
F
 
I
T
 
I
A
 
P
L
 
I
P
 
P
S
 
A
A
 
G
W
 
I
V
 
L
I
 
M
R
 
K
K
 
K
V
 
L
G
 
S
Y
 
Y
K
 
K
T
 
A
G
 
G
M
 
I
A
 
I
M
 
T
G
 
G
M
 
L
G
 
F
I
 
L
M
 
Y
M
 
A
I
 
L
A
 
G
G
 
A
L
 
A
L
 
L
F
 
F
I
 
W
P
 
P
A
 
A
A
 
A
K
 
E
T
 
I
Q
 
M
V
 
N
F
 
Y
A
 
T
L
 
L
F
 
F
L
 
L
F
 
V
A
 
G
Q
 
L
L
 
F
V
 
I
M
 
I
G
 
A
T
 
A
G
 
G
Q
 
L
T
 
G
L
 
C
L
 
L
Q
x
E
T
 
T
A
 
A
V
 
A
N
 
N
P
 
P
Y
 
F
V
 
V
V
 
T
R
 
V
I
 
L
G
 
G
P
 
P
E
 
E
E
 
S
S
 
S
A
 
G
A
 
H
A
 
F
R
 
R
V
 
L
S
 
N
V
 
L
M
 
A
G
 
Q
I
 
T
L
 
F
N
 
N
K
 
S
G
 
F
A
 
G
G
 
A
V
 
I
I
 
I
A
 
A
P
 
V
L
 
V
V
 
F
F
 
G
T
 
Q
A
 
S
L
 
L
I
 
I
L
 
L
D
 
S
S
 
N
F
 
V
K
 
P
D
 
H
R
 
Q
-
 
S
-
 
Q
-
 
D
V
 
V
G
 
L
V
 
D
E
 
K
L
 
M
T
 
S
Q
 
P
A
 
E
Q
 
Q
I
 
L
D
 
S
E
 
A
M
 
Y
A
 
K
N
 
H
G
 
S
L
 
L
V
 
V
F
 
L
-
 
S
-
 
V
-
 
Q
-
 
T
P
 
P
Y
 
Y
L
 
M
G
 
I
M
 
I
A
 
V
I
 
A
F
 
I
I
 
V
G
 
L
V
 
L
L
 
V
A
 
A
L
 
L
L
 
L
V
 
I
K
 
M
K
 
L
S
 
T
P
 
K
L
 
F
P
 
P
E
 
A
L
 
L
E
 
Q
N
 
S
E
 
-
D
 
D
E
 
N
Q
 
H
E
 
S
E
 
D
G
 
A
T
 
K
K
 
Q
G
 
G
H
 
S
T
 
F
R
 
S
E
 
A
A
 
S
L
 
L
S
 
S
H
 
R
-
 
L
-
 
A
-
 
R
-
 
I
P
 
R
N
 
H
L
 
W
A
 
R
L
 
W
G
 
A
V
 
V
V
 
L
A
 
A
L
 
Q
F
 
F
F
 
C
Y
 
Y
V
 
V
-
 
G
-
 
A
-
 
Q
-
 
T
-
 
A
-
 
C
-
x
W
-
 
S
-
 
Y
-
 
L
-
 
I
-
 
R
-
 
Y
A
 
A
V
 
V
E
 
E
V
 
E
I
 
I
A
 
P
G
 
G
D
 
M
T
 
T
I
 
A
G
 
G
T
 
-
F
 
F
A
 
A
L
 
-
S
 
-
L
 
-
G
 
-
V
 
-
E
 
A
N
 
N
Y
 
Y
G
 
-
V
 
-
M
 
-
T
 
L
S
 
T
Y
 
G
T
 
T
M
 
M
I
 
V
C
 
C
M
 
F
V
 
F
I
 
I
G
 
G
Y
 
R
S
 
F
L
 
T
G
 
G
I
 
T
L
 
W
T
 
L
I
 
I
P
 
S
R
 
R
F
 
F
I
 
A
S
 
P
Q
 
H
P
 
-
K
 
K
A
 
V
L
 
L
M
 
A
I
 
A
S
 
Y
A
 
A
I
 
L
L
 
I
G
 
A
L
 
M
M
 
A
L
 
L
T
 
C
L
 
L
G
 
I
I
 
S
L
 
A
F
 
F
G
 
A
D
 
G
N
 
G
E
 
H
S
 
V
Y
 
G
A
 
L
I
 
I
A
 
A
N
 
L
A
 
T
L
 
L
L
 
C
V
 
S
P
 
A
F
 
F
G
 
-
G
 
-
A
 
-
M
 
-
L
 
-
P
 
-
D
 
-
T
 
-
L
 
-
L
 
-
M
 
-
I
 
-
A
 
-
F
 
-
L
 
-
G
 
-
L
 
-
A
 
-
N
 
M
A
 
S
I
 
I
V
 
Q
W
 
Y
P
 
P
A
 
T
V
 
I
W
 
F
P
 
S
L
 
L
A
 
G
L
 
I
S
 
K
G
 
N
M
 
L
G
 
G
K
 
Q
L
 
D
T
 
T
S
 
K
T
 
Y
G
 
G
S
 
S
A
 
S
L
 
F
L
 
I
V
 
V
M
 
M
G
 
T
I
 
I
A
 
I
G
 
G
G
 
G

Sites not aligning to the query:

Query Sequence

>5208608 Shew_1119 glucose/galactose transporter (RefSeq)
MAIVAGLFFILGFATWLNGSLMPYLKQILQLTPLQASLILFSFYIAVTFTALPSAWVIRK
VGYKTGMAMGMGIMMIAGLLFIPAAKTQVFALFLFAQLVMGTGQTLLQTAVNPYVVRIGP
EESAAARVSVMGILNKGAGVIAPLVFTALILDSFKDRVGVELTQAQIDEMANGLVFPYLG
MAIFIGVLALLVKKSPLPELENEDEQEEGTKGHTREALSHPNLALGVVALFFYVAVEVIA
GDTIGTFALSLGVENYGVMTSYTMICMVIGYSLGILTIPRFISQPKALMISAILGLMLTL
GILFGDNESYAIANALLVPFGGAMLPDTLLMIAFLGLANAIVWPAVWPLALSGMGKLTST
GSALLVMGIAGGAFGPLFWGLTSSATSLGQQGGYMVMLPCYLFILFYAVKGYKMRSWK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory