SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 5208943 Shew_1444 TRAP dicarboxylate transporter, DctM subunit (RefSeq) to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
30% identity, 95% coverage: 17:459/465 of query aligns to 15:422/427 of 8b01B

query
sites
8b01B
G
 
G
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M
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G
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F
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L
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G
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-
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A
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F
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L
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V
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L
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T
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E
D
 
S
S
 
T
L
 
G
A
 
I
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N
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F
A
 
A
L
 
A
K
 
Q
L
 
Q
Y
 
M
E
 
I
S
 
G
T
 
G
S
 
L
E
 
D
H
 
N
Y
 
F
T
 
T
L
 
L
L
 
L
A
 
A
I
 
V
P
 
P
F
 
F
F
 
F
I
 
V
L
 
L
S
 
T
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G
A
 
H
F
 
L
L
 
M
S
 
N
T
 
S
G
 
A
G
 
G
V
 
I
A
 
T
R
 
E
R
 
R
I
 
I
I
 
F
D
 
N
F
 
F
A
 
A
M
 
K
D
 
A
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M
V
 
V
G
 
G
H
 
H
I
 
I
R
 
T
G
 
G
G
 
S
L
 
L
A
 
G
M
 
H
A
 
V
S
 
N
V
 
I
M
 
L
A
 
A
C
 
S
M
 
L
L
 
L
F
 
F
A
x
S
A
 
G
V
 
M
S
|
S
G
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G
S
 
S
S
 
A
P
 
L
A
 
A
T
 
D
V
 
A
A
 
G
A
 
G
I
 
L
G
 
G
S
 
Q
I
 
L
V
 
E
I
 
I
V
 
K
G
 
S
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M
V
 
R
R
 
D
A
 
A
G
 
K
Y
 
Y
P
 
D
E
 
D
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D
F
 
F
A
 
A
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G
G
 
G
V
 
L
I
 
T
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A
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A
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S
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C
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I
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I
G
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G
I
 
P
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L
I
x
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P
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P
P
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P
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S
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I
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P
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L
L
 
V
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I
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Y
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G
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V
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V
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S
E
 
N
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T
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S
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I
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G
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A
M
 
L
F
 
F
M
 
L
A
 
A
G
 
G
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A
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I
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P
G
 
G
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L
M
 
L
M
 
C
G
 
C
L
 
I
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A
L
 
L
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C
L
 
I
A
 
M
I
 
T
Y
 
Y
I
 
F
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I
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A
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K
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K
K
 
R
K
 
G
L
 
Y
P
 
M
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T
R
 
L
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P
F
 
R
P
 
A
G
 
S
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R
R
 
K
P
 
E
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R
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L
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I
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A
S
 
F
A
 
R
K
 
D
A
 
A
M
 
F
G
 
L
G
 
S
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L
A
 
L
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T
I
 
P
V
 
F
I
 
I
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I
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I
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G
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G
I
 
I
Y
 
F
G
 
S
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G
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K
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F
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P
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T
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E
A
 
A
A
 
A
A
 
I
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I
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S
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S
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L
Y
 
Y
A
 
A
Y
 
L
F
 
F
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L
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G
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T
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V
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V
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Y
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K
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S
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L
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-
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-
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M
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G
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F
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G
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W
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I
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V
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A
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Q
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A
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I
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L
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L
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L
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L
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L
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I
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N
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L
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L
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L
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L
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F
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L
G
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G
N
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I
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E
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S
S
 
L
A
 
A
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L
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L
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L
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L
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L
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V
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P
I
 
F
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L
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V
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P
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V
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A
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T
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S
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V
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G
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I
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D
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P
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V
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H
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F
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G
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V
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M
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A
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I
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L
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N
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L
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M
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I
G
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G
M
x
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L
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P
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P
V
x
M
G
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G
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M
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A
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L
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Y
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V
T
 
V
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S
G
 
K
I
 
V
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G
G
 
N
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I
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P
M
 
F
G
 
H
W
 
V
V
 
L
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T
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R
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G
C
 
V
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L
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P
W
 
L
L
 
L
A
 
V
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P
L
 
L
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F
F
 
I
F
 
V
L
 
L
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G
L
 
L
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I
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I
Y
 
V
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F
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P
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Q
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I
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T
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L
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F
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L
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P
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Q
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L
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V

Query Sequence

>5208943 Shew_1444 TRAP dicarboxylate transporter, DctM subunit (RefSeq)
MTIATLFISLFLCMLLGMPIAIALGFSSMLTILLFSDDSLASVALKLYESTSEHYTLLAI
PFFILSSAFLSTGGVARRIIDFAMDSVGHIRGGLAMASVMACMLFAAVSGSSPATVAAIG
SIVIVGMVRAGYPEKFAAGVITTSGTLGILIPPSIVMLVYAAATEVSAARMFMAGLIPGL
MMGLLLMLAIYIVARIKKLPSRPFPGFRPLAISSAKAMGGLALIVIVLGSIYGGIASPTE
AAAVACVYAYFIAVFGYRDIGPLKNVSWRDSGEPLIRAILRNLGFMVLAVFKTPADKEIR
HVVRDGAKVSIMLLFIIANAMLFAHVLTTERIPHLIAETIVGMGLPVWGFLIIVNLLLLA
AGNFMEPSAILLIMAPILFPIATQLGIDPIHLGIIMVVNMEIGMLTPPVGLNLFVTAGIT
GRSMGWVIHSCIPWLALLLFFLALITYIPQISLFLPEYIDKLNGY

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory