Comparing 5209059 FitnessBrowser__PV4:5209059 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
7cyxA Crystal strcuture of glycine oxidase from bacillus cereus atcc 14579 (see paper)
25% identity, 84% coverage: 30:391/429 of query aligns to 3:349/363 of 7cyxA
1y56B Crystal structure of l-proline dehydrogenase from p.Horikoshii (see paper)
22% identity, 80% coverage: 44:386/429 of query aligns to 20:351/374 of 1y56B
Sites not aligning to the query:
6y48B Baeyer-villiger monooxygenase bvmoafl210 from aspergillus flavus in complex with NADP
28% identity, 23% coverage: 26:125/429 of query aligns to 6:101/538 of 6y48B
Sites not aligning to the query:
>5209059 FitnessBrowser__PV4:5209059
MSFARCNSYYNATIKQETYYPSLEGELDVDVVIIGAGFTGVATALELAERGVKVAVVEAN
KVGWGATGRNGGQVTGSLSGDNAMVKQLRNCIGHDAEEFVWNLRWRGHEIIKKRVEKYQI
DCDLKFGHLHTAYKPAHMAEMQTTYEEGLRRGMGDELTLLSKADIPDYLDTPLYHGGLLN
RRNMHLHSVNLCIGEARAAEAYGALIFEGSQVLDISDDKRVTVTTDKGRITANCAVLAGN
AYHRLARHKLRGMLFPASLGNCATVRLDPQLAKQLNPHDLAVYDSRFVLDYYRMTADNRL
MFGGGTNYSGRDSKNVAAELRPAIERTFPRLKGVEIEFDWTGMAGIVVNRIPQLGKVSEH
LFYCQGYSGHGVATSHIMGEIMSQAVQGQLEEFDLFAQMKQIRLPVGDWLGNQGMALGML
YYRMMEHFR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory