SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 5209266 FitnessBrowser__PV4:5209266 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

8gxkB Pseudomonas jinjuensis n-acetyltransferase (see paper)
40% identity, 87% coverage: 17:191/201 of query aligns to 15:183/188 of 8gxkB

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8gxkB
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8gxfB Pseudomonas flexibilis gcn5 family acetyltransferase (see paper)
35% identity, 88% coverage: 15:191/201 of query aligns to 13:183/187 of 8gxfB

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8gxfB
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1yreB Hypothetical protein pa3270 from pseudomonas aeruginosa in complex with coa
39% identity, 87% coverage: 17:191/201 of query aligns to 15:183/187 of 1yreB

query
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1yreB
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E

Query Sequence

>5209266 FitnessBrowser__PV4:5209266
MSQDALRGCLSGERVVLEPLQEEHIPALSIAVSDGELWNLWYTSAPHPDEMKTYVEQALA
SEQRGEALAFAVRDRHSGEIVGCTRLMSWDQTHRRIEIGHTWYAKSAQRTGVNSECKLLL
LTYAFETLDVIAVEFRTHWHNQRSREAITRLGAKQDGVLRNHRILKDGTIRDTVVYSIIA
SEWPSVKQNLKFRMRQYLENQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory