Comparing 5209403 FitnessBrowser__PV4:5209403 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
Q39232 Sucrose transport protein SUC1; AtSUC1; Sucrose permease 1; Sucrose-proton symporter 1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
26% identity, 40% coverage: 40:246/524 of query aligns to 42:271/513 of Q39232
>5209403 FitnessBrowser__PV4:5209403
MNNKEKHRMSQNTLPAQGTTTVKPALSFWQIFNMCFGFLGIQFGFALQNANVSRIFQTLG
AAIDDIPILWIAAPLTGLLVQPIIGYMSDNTWGRLGRRRPYFLIGAIFTTLAIFIMPHSP
VLWVAAGMLWIMDASINIAMEPFRAFVGDNLPTKQRPLGYAMQSFFIGVGAVVASALPYL
LTNYFDVANTAPEGEIADSVRYAFYFGGAVLLLAVSWTVFTTKEYSPEELARFEQENGEQ
VTLHHDRSWLAYQKGAMLWSLVGAILTAVIFLQSLDKQLYLLALGIFAFGPLQWFCANTL
KHIKGEERHQQGMVFSVVDALFHMPKAMRQLAVVQFFSWFALFSMWIYTTAAVTDHHYGT
QDVLSKAYNDGADWVGMLFASYNGFAAVAAIFIPLLAMAVGLKVTHLINLCCGGIGLISF
YFIQDPNLLWLPMIGVGIAWASILSIPYALLSNALPAAKMGVYMGIFNFFIVIPQLLAAS
VLGVLLNAFFDGKPIFALILGGSFMILAGISVLFVSSEASKAER
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory