Comparing 5209538 FitnessBrowser__PV4:5209538 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
Q8GAI3 4-methylaminobutanoate oxidase (formaldehyde-forming); MABO; Demethylating gamma-N-methylaminobutyrate oxidase; Gamma-N-methylaminobutyrate oxidase 1; EC 1.5.3.19 from Paenarthrobacter nicotinovorans (Arthrobacter nicotinovorans) (see paper)
28% identity, 48% coverage: 42:255/443 of query aligns to 28:228/824 of Q8GAI3
2gagB Heteroteterameric sarcosine: structure of a diflavin metaloenzyme at 1.85 a resolution (see paper)
25% identity, 83% coverage: 41:409/443 of query aligns to 21:378/403 of 2gagB
Sites not aligning to the query:
>5209538 FitnessBrowser__PV4:5209538
MSYDPLLNDFPDGQPWPDSYWATTVSRPARLPALSGRMQTDVAIVGGGFTGLLTAYYLAS
EFNIEARVLEANQIGFGASGRNAGFVLKGSGRMGYSQMAKKWGMETTKGIYGEFTSAVRR
VEQLIEQHEIACDAQPKGYLKIAHNAKAYSTLKGAADFIAEHLGDDAQFLTPSELKESYM
DNHQAYGALRLNDGFGVNPLKLCLGYKRVVQSLGVHLHEESCVREWLKEGPHHRLITDKG
ELIAKQVVSAGNAYTPKRFNQAVDNRYLPILSNIIVTAPLTDAQLEATGLKTHQVVMDTR
RLKYYYRLLSDNRLLFGGRGAISGADAGDPRYGERLKSAMADCFPALAEVTVDHNWTGWI
AAALDDMPHVFSQGNMGYSLGYCGSGVAFSAQAAYRLAQHIAGERLPELPLYQSPLPKFH
FARLRRLGQSAYYQYAWLRDRYS
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory