Comparing 5210195 FitnessBrowser__PV4:5210195 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 7 hits to proteins with known functional sites (download)
3tdtA Complex of tetrahydrodipicolinate n-succinyltransferase with 2-amino- 6-oxopimelate and coenzyme a (see paper)
80% identity, 100% coverage: 1:274/274 of query aligns to 1:274/274 of 3tdtA
2tdtA Complex of tetrahydrodipicolinate n-succinyltransferase with 2- aminopimelate and coenzyme a (see paper)
80% identity, 100% coverage: 1:274/274 of query aligns to 1:274/274 of 2tdtA
1kgtA Crystal structure of tetrahydrodipicolinate n-succinyltransferase in complex with pimelate and succinyl-coa (see paper)
80% identity, 100% coverage: 1:274/274 of query aligns to 1:274/274 of 1kgtA
1kgqA Crystal structure of tetrahydrodipicolinate n-succinyltransferase in complex with l-2-aminopimelate and succinamide-coa (see paper)
80% identity, 100% coverage: 1:274/274 of query aligns to 1:274/274 of 1kgqA
3r8yA Structure of the bacillus anthracis tetrahydropicolinate succinyltransferase
42% identity, 33% coverage: 104:194/274 of query aligns to 77:168/203 of 3r8yA
3r5bA Pseudomonas aeruginosa dapd (pa3666) in complex with l-2-aminopimelate (see paper)
28% identity, 48% coverage: 84:214/274 of query aligns to 166:284/321 of 3r5bA
Sites not aligning to the query:
3r5aA Pseudomonas aeruginosa dapd (pa3666) in complex with d-2-aminopimelate (see paper)
28% identity, 48% coverage: 84:214/274 of query aligns to 166:284/321 of 3r5aA
Sites not aligning to the query:
>5210195 FitnessBrowser__PV4:5210195
MEALRQRIETAFEARAEITPTTVEPSVRADVEKAIAMLDTGEARVAEKIDGQWNVHQWLK
KAVLLSFRIFDNQVIDGAETKFFDKVPMKFADYDEARFKQEAIRVVPPAAVRKGSFIGKN
TVLMPSYVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQAGPTIIED
NCFIGARSEIVEGVVVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGTLPS
QCGKYNLYAAIIVKKVDAKTRGKVGINELLRIVD
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory