Comparing 5210576 FitnessBrowser__PV4:5210576 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
5odqB Heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus soaked with bromoethanesulfonate. (see paper)
23% identity, 91% coverage: 1:224/247 of query aligns to 1:239/291 of 5odqB
5odhH Heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus soaked with heterodisulfide for 3.5 minutes (see paper)
23% identity, 91% coverage: 1:224/247 of query aligns to 1:239/291 of 5odhH
Sites not aligning to the query:
5odhB Heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus soaked with heterodisulfide for 3.5 minutes (see paper)
23% identity, 91% coverage: 1:224/247 of query aligns to 1:239/291 of 5odhB
5odcB Heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus at 2.3 a resolution (see paper)
23% identity, 91% coverage: 1:224/247 of query aligns to 1:239/291 of 5odcB
>5210576 FitnessBrowser__PV4:5210576
MKIALFIPCLVNQMMPHVGIATVELLEKLGHQVILPKGQTCCGQPMTNSGCFDEAKKTTL
KLLNAFKGVECDAIVCPAASCLVAAKENFHEFDDSPEAQAVIDKLYELTEFLHDVAPIPA
FNKAFNFKISLQLSCHGIRMLDLATPSEQMGPRTNKVEAVLSRIPGIEIVYPDRRDECCG
FGGTFAVDEGAVSAKMGKDKAQAHAATGATYAVGFDPSCLLHLDGMIRRQLLPIATRHIA
EVINAAL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory