Comparing 5210736 Shew_3164 ABC transporter-related protein (RefSeq) to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3c4jA Abc protein artp in complex with atp-gamma-s
67% identity, 100% coverage: 1:240/241 of query aligns to 3:242/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
67% identity, 100% coverage: 1:240/241 of query aligns to 3:242/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
67% identity, 100% coverage: 1:240/241 of query aligns to 3:242/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
67% identity, 100% coverage: 1:240/241 of query aligns to 3:242/242 of 2oljA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
63% identity, 100% coverage: 1:240/241 of query aligns to 1:240/240 of 4ymuJ
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
60% identity, 100% coverage: 1:240/241 of query aligns to 2:240/241 of 4u00A
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
49% identity, 100% coverage: 2:241/241 of query aligns to 3:254/258 of 1b0uA
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
49% identity, 100% coverage: 2:241/241 of query aligns to 7:258/258 of P02915
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
41% identity, 100% coverage: 1:241/241 of query aligns to 1:246/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
41% identity, 100% coverage: 1:241/241 of query aligns to 2:247/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
41% identity, 100% coverage: 1:241/241 of query aligns to 2:247/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
41% identity, 100% coverage: 1:241/241 of query aligns to 2:247/344 of 6cvlD
P0AAH0 Phosphate import ATP-binding protein PstB; ABC phosphate transporter; Phosphate-transporting ATPase; EC 7.3.2.1 from Escherichia coli (strain K12) (see paper)
39% identity, 98% coverage: 2:237/241 of query aligns to 11:253/257 of P0AAH0
Sites not aligning to the query:
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
40% identity, 89% coverage: 1:215/241 of query aligns to 3:217/223 of 2pclA
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
39% identity, 89% coverage: 1:215/241 of query aligns to 3:221/615 of 5lilA
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
39% identity, 89% coverage: 1:215/241 of query aligns to 3:221/592 of 5lj7A
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
41% identity, 89% coverage: 1:214/241 of query aligns to 1:223/232 of 1f3oA
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
38% identity, 91% coverage: 1:220/241 of query aligns to 4:229/650 of 5ws4A
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
41% identity, 89% coverage: 1:214/241 of query aligns to 1:223/230 of 1l2tA
8tzjA Cryo-em structure of vibrio cholerae ftse/ftsx complex (see paper)
40% identity, 78% coverage: 10:196/241 of query aligns to 12:198/220 of 8tzjA
>5210736 Shew_3164 ABC transporter-related protein (RefSeq)
MIKISNLHKYFGDNQVLKGIDESIARGEVVSVIGPSGSGKSTFLRCINLLEQPTQGEIVI
DGQSITAPDACIDKLRQKVGMVFQNFNLFPHKTVQQNITLAPVKLGLMTQAEADSEAMRL
LDQVGLSDKASAYPASLSGGQKQRVAIARALAMKPELMLFDEPTSALDPEMVGDVLDVMK
QLAQAGMTMVIVTHEMGFAKDVSDRVIFMDGGYVVESNVPALLFGQPQEPRTQAFLSKVL
R
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory