Comparing 5210760 FitnessBrowser__PV4:5210760 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
Q02DS7 Tryptophan-specific transport protein; Tryptophan permease from Pseudomonas aeruginosa (strain UCBPP-PA14) (see paper)
33% identity, 92% coverage: 1:362/395 of query aligns to 15:376/417 of Q02DS7
Sites not aligning to the query:
>5210760 FitnessBrowser__PV4:5210760
MLGSIAIVAGTAIGGGMLALPLATASLGTIPALLLLVAIWGVSIYTSLLMLEINLRAGVG
LNVHAITGKTLGKVGQLIQGGSFLSLLFALTMVYLMGGSSLLESRFEPLGIKVNHEAAVL
IFTLVFGGFIAIGVSWIDKVSRVLFSAMVALFVIVVLFLLPEVSPSYILRESATELVSKG
ELGNLWLAAIPVVFTSFGFHVCIATIVRYLDGDAMSLRKVLMIGSTIPLVCYILWLMVTL
GTVGGATVYGFEGSLPKLVSALQGIAHSDILRQCIDLFANLALITSFLGVTMSLFDYIAE
LTRARDNLLGRLQTWLITFVPPLLCALYYPDGFIKVLGFAALPLVVMIIFLPIAMALGQR
KQNLGGYQVSGGQFALAASALVGLVIIAAQLWVAL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory