SitesBLAST
Comparing 5210768 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P0A9T0 D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli (strain K12) (see 2 papers)
69% identity, 100% coverage: 1:409/409 of query aligns to 1:410/410 of P0A9T0
1ybaA The active form of phosphoglycerate dehydrogenase (see paper)
69% identity, 99% coverage: 5:409/409 of query aligns to 1:406/406 of 1ybaA
- active site: N104 (= N108), R236 (= R240), D260 (= D264), E265 (= E269), H288 (= H292)
- binding 2-oxoglutaric acid: R56 (= R60), S57 (= S61), C79 (= C83), I80 (= I84), G81 (= G85)
- binding nicotinamide-adenine-dinucleotide: I80 (= I84), F102 (= F106), N104 (= N108), V108 (= V112), G154 (= G158), Y155 (= Y159), G156 (= G160), H157 (= H161), I158 (= I162), Y176 (≠ F180), D177 (= D181), I178 (= I182), K181 (= K185), H206 (= H210), V207 (= V211), P208 (= P212), S212 (≠ Q216), T213 (= T217), M216 (= M220), A234 (= A238), S235 (= S239), R236 (= R240), D260 (= D264), H288 (= H292), G290 (= G294), G291 (= G295)
- binding phosphate ion: G81 (= G85), T82 (= T86), N83 (= N87), R236 (= R240)
1psdA The allosteric ligand site in the vmax-type cooperative enzyme phosphoglycerate dehydrogenase (see paper)
69% identity, 99% coverage: 7:409/409 of query aligns to 1:404/404 of 1psdA
- active site: N102 (= N108), R234 (= R240), D258 (= D264), E263 (= E269), H286 (= H292)
- binding nicotinamide-adenine-dinucleotide: F100 (= F106), N102 (= N108), V106 (= V112), G152 (= G158), Y153 (= Y159), G154 (= G160), H155 (= H161), I156 (= I162), Y174 (≠ F180), D175 (= D181), I176 (= I182), E177 (= E183), K179 (= K185), H204 (= H210), V205 (= V211), P206 (= P212), T211 (= T217), M214 (= M220), A232 (= A238), S233 (= S239), R234 (= R240), D258 (= D264), H286 (= H292), I287 (≠ V293)
- binding serine: H338 (= H345), N340 (= N347), R341 (= R348), P342 (= P349), G343 (= G350), V344 (≠ I351), L345 (= L352), L364 (= L371)
2p9eA Crystal structure of g336v mutant of e.Coli phosphoglycerate dehydrogenase (see paper)
69% identity, 99% coverage: 5:409/409 of query aligns to 1:406/406 of 2p9eA
- active site: N104 (= N108), R236 (= R240), D260 (= D264), E265 (= E269), H288 (= H292)
- binding 1,4-dihydronicotinamide adenine dinucleotide: I80 (= I84), F102 (= F106), V108 (= V112), G154 (= G158), Y155 (= Y159), G156 (= G160), H157 (= H161), I158 (= I162), Y176 (≠ F180), D177 (= D181), I178 (= I182), K181 (= K185), H206 (= H210), V207 (= V211), P208 (= P212), S212 (≠ Q216), T213 (= T217), M216 (= M220), A234 (= A238), S235 (= S239), R236 (= R240), D260 (= D264), H288 (= H292), G290 (= G294), G291 (= G295)
1sc6D Crystal structure of w139g d-3-phosphoglycerate dehydrogenase complexed with NAD+ (see paper)
65% identity, 99% coverage: 7:409/409 of query aligns to 1:384/384 of 1sc6D
- active site: N102 (= N108), R228 (= R240), D252 (= D264)
- binding nicotinamide-adenine-dinucleotide: I78 (= I84), P99 (= P105), F100 (= F106), S101 (= S107), N102 (= N108), T103 (= T109), G146 (= G158), Y147 (= Y159), G148 (= G160), H149 (= H161), I150 (= I162), Y168 (≠ F180), D169 (= D181), I170 (= I182), K173 (= K185), H198 (= H210), V199 (= V211), P200 (= P212), S204 (≠ Q216), T205 (= T217), M208 (= M220), S227 (= S239)
P87228 Putative D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
51% identity, 98% coverage: 9:409/409 of query aligns to 54:466/466 of P87228
- S87 (≠ G43) modified: Phosphoserine
- S258 (≠ T214) modified: Phosphoserine
1wwkA Crystal structure of phosphoglycerate dehydrogenase from pyrococcus horikoshii ot3
39% identity, 74% coverage: 11:314/409 of query aligns to 1:300/304 of 1wwkA
- active site: S96 (≠ N108), R230 (= R240), D254 (= D264), E259 (= E269), H278 (= H292)
- binding nicotinamide-adenine-dinucleotide: V100 (= V112), G146 (= G158), F147 (≠ Y159), G148 (= G160), R149 (≠ H161), I150 (= I162), Y168 (≠ F180), D169 (= D181), P170 (= P187), Y171 (≠ L188), H200 (= H210), V201 (= V211), P202 (= P212), T207 (= T217), T228 (≠ A238), S229 (= S239), R230 (= R240), D254 (= D264), H278 (= H292), G280 (= G294), A281 (≠ G295)
6rj5A Crystal structure of phgdh in complex with compound 39 (see paper)
34% identity, 73% coverage: 12:309/409 of query aligns to 3:295/301 of 6rj5A
- binding 2-methyl-~{N}-[(1~{R})-1-[4-(methylsulfonylcarbamoyl)phenyl]ethyl]-5-phenyl-pyrazole-3-carboxamide: T73 (≠ I84), P94 (= P105), L146 (≠ I157), G147 (= G158), G149 (= G160), I151 (= I162), Y169 (≠ F180), D170 (= D181), P171 (vs. gap), I172 (vs. gap), I173 (= I182), L188 (= L197), H201 (= H210), T202 (≠ V211), P203 (= P212), T208 (= T217), L211 (≠ M220)
6cwaA Crystal structure phgdh in complex with nadh and 3-phosphoglycerate at 1.77 a resolution (see paper)
34% identity, 73% coverage: 12:309/409 of query aligns to 2:294/299 of 6cwaA
- binding 1,4-dihydronicotinamide adenine dinucleotide: T72 (≠ I84), N96 (= N108), A100 (≠ V112), G146 (= G158), G148 (= G160), R149 (≠ H161), I150 (= I162), Y168 (≠ F180), D169 (= D181), P170 (vs. gap), I171 (vs. gap), H200 (= H210), T201 (≠ V211), P202 (= P212), S206 (≠ Q216), T207 (= T217), C228 (≠ A238), A229 (≠ S239), R230 (= R240), D254 (= D264), H277 (= H292), G279 (= G294), A280 (≠ G295)
7ewhA Crystal structure of human phgdh in complex with homoharringtonine
34% identity, 73% coverage: 12:309/409 of query aligns to 3:295/302 of 7ewhA
- binding (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine: I145 (≠ V156), L146 (≠ I157), G147 (= G158), L148 (≠ Y159), G149 (= G160), R150 (≠ H161), I151 (= I162), G152 (= G163), D170 (= D181), P171 (vs. gap), I172 (vs. gap), V200 (≠ L209), H201 (= H210), T202 (≠ V211), P203 (= P212)
6rihA Crystal structure of phgdh in complex with compound 9 (see paper)
34% identity, 73% coverage: 12:309/409 of query aligns to 3:295/302 of 6rihA
- binding ~{N}-cyclopropyl-2-methyl-5-phenyl-pyrazole-3-carboxamide: L146 (≠ I157), G147 (= G158), G149 (= G160), Y169 (≠ F180), D170 (= D181), P171 (vs. gap), I172 (vs. gap), I173 (= I182), L188 (= L197), T202 (≠ V211), P203 (= P212), T208 (= T217), L211 (≠ M220)
6plgA Crystal structure of human phgdh complexed with compound 15 (see paper)
34% identity, 73% coverage: 12:309/409 of query aligns to 3:295/303 of 6plgA