SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 5211139 FitnessBrowser__PV4:5211139 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

3iehA Crystal structure of putative metallopeptidase (yp_001051774.1) from shewanella baltica os155 at 2.45 a resolution
64% identity, 97% coverage: 4:270/274 of query aligns to 1:267/268 of 3iehA

query
sites
3iehA
R
 
R
D
 
S
P
 
P
F
 
F
Q
 
E
S
 
S
F
 
F
T
 
Q
W
 
W
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K
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D
I
 
I
F
 
F
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N
C
 
C
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E
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D
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I
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D
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N
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F
Y
 
Y
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L
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L
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E
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Q
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E
A
 
M
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R
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L
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G
L
 
M
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V
A
 
E
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K
K
 
N
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L
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G
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E
A
 
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G
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K
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Y
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K
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V
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S
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L
Y
 
Y
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Q
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S
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P
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A
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A
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K
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S
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G
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L
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P
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S
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L
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L
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I
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S
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A
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G
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F
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H
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G
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E
E
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E
A
 
S
A
 
A
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G
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P
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W
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G
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L
L
 
L
Y
 
H
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F
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E
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A
E
 
S
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A
E
 
D
L
 
L
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F
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E
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R
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V
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N
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L
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S
L
 
L
L
 
L
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P
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L
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V
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N
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P
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T
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G
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F
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R
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G
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H
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R
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F
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N
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K
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Y
G
 
G
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E
N
 
N
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P
N
 
N
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R
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G
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F
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V
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F
E
 
E
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N
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K
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A
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A
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C
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R
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D
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I
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C
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H
E
 
E
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D
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V
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L
L
 
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E
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A
Y
 
Y
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Y
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Q
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D
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G
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Y
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A
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A
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A
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M
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L
 
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C

4okoA Crystal structure of francisella tularensis rep34 (rapid encystment phenotype protein 34 kda) (see paper)
31% identity, 32% coverage: 48:135/274 of query aligns to 56:143/290 of 4okoA

query
sites
4okoA
A
 
V
G
 
G
P
 
S
H
 
Y
P
 
K
L
 
L
E
 
Y
L
 
A
Y
 
L
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K
A
 
N
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W
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D
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A
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S
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K
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Y
I
 
V
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L
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V
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T
A
 
G
G
 
G
F
 
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H
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H
G
 
G
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Y
E
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E
A
 
T
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S
G
 
G
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V
W
 
Q
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G
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A
L
 
I
Y
 
S
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F
L
 
A
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Q
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T
L
 
R
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A
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L
E
 
E
L
 
F
F
 
A
G
 
R
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D
I
 
Y
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N
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I
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V
L
 
I
L
 
L
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P
L
 
C
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L
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S
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P
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W
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G
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Y
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E
R
 
T
G
 
I
H
 
N
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R
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W
N
 
N
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P
L
 
N
G
 
A
Q
 
L
N
 
D
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P
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N
R
 
R
G
 
S
F
 
F
V
 
Y
L
 
L
E
 
E
N
 
S
G
 
G

Sites not aligning to the query:

Query Sequence

>5211139 FitnessBrowser__PV4:5211139
MSSRDPFQSFTWHSDIFSCQSNDISSFYARLEEQASRLGLQARKLGDAGPHPLELYQSPA
QKADQPSILISAGFHGEEAAGPWGLLYFLNELEPELFGQINLSLLPLVNPTGFKRGHRFN
KLGQNPNRGFVLENGRGRSNQDTSSEGEILLAHSQLLAAASKDGILTCHEDVLLTDTYIY
SFEANQHPGQFSRELRDALGHYFPIAQDGLIDDCPVQDGIIFNHFDLSFEAFLVRLGASV
GVCSETPGQQSFDQRILANAAIIKRFVELTLAKR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory