Comparing 5211139 FitnessBrowser__PV4:5211139 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
3iehA Crystal structure of putative metallopeptidase (yp_001051774.1) from shewanella baltica os155 at 2.45 a resolution
64% identity, 97% coverage: 4:270/274 of query aligns to 1:267/268 of 3iehA
4okoA Crystal structure of francisella tularensis rep34 (rapid encystment phenotype protein 34 kda) (see paper)
31% identity, 32% coverage: 48:135/274 of query aligns to 56:143/290 of 4okoA
Sites not aligning to the query:
>5211139 FitnessBrowser__PV4:5211139
MSSRDPFQSFTWHSDIFSCQSNDISSFYARLEEQASRLGLQARKLGDAGPHPLELYQSPA
QKADQPSILISAGFHGEEAAGPWGLLYFLNELEPELFGQINLSLLPLVNPTGFKRGHRFN
KLGQNPNRGFVLENGRGRSNQDTSSEGEILLAHSQLLAAASKDGILTCHEDVLLTDTYIY
SFEANQHPGQFSRELRDALGHYFPIAQDGLIDDCPVQDGIIFNHFDLSFEAFLVRLGASV
GVCSETPGQQSFDQRILANAAIIKRFVELTLAKR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory