SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 557004_164_355 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
35% identity, 100% coverage: 1:192/192 of query aligns to 44:237/240 of 4qhzC

query
sites
4qhzC
A
 
A
I
 
I
V
 
V
L
 
L
F
 
F
D
 
D
G
 
G
S
 
K
N
 
D
T
 
L
Q
 
S
A
 
A
W
 
W
Q
 
E
N
 
S
G
 
V
K
 
K
-
 
G
-
 
G
-
 
A
-
 
A
-
 
E
-
 
W
-
 
D
I
 
V
E
 
H
D
 
D
G
 
G
V
 
V
L
 
F
-
 
T
-
 
V
-
 
N
-
 
K
-
 
K
K
 
K
A
 
G
G
 
D
A
 
I
R
 
Q
T
 
T
K
 
K
D
 
Q
T
 
K
F
 
F
R
 
N
D
 
D
F
 
F
R
 
Q
L
 
M
Y
 
H
L
 
I
E
 
E
F
 
W
M
 
Q
I
 
V
P
 
P
L
 
T
K
 
N
P
 
I
E
 
T
P
 
G
P
 
-
I
 
-
S
 
E
H
 
S
P
 
Q
H
 
S
R
 
R
G
 
G
N
|
N
S
|
S
G
 
G
V
 
I
F
 
F
A
 
L
V
 
Q
G
 
G
A
 
M
Y
 
Y
E
|
E
V
 
V
Q
|
Q
I
 
V
S
 
L
D
 
D
N
 
C
F
 
Y
G
 
N
L
 
-
D
 
-
P
 
-
D
 
N
P
 
P
R
 
T
A
 
Y
W
 
-
Q
 
-
D
 
-
M
 
-
D
 
-
I
 
-
L
 
-
K
 
-
P
 
-
V
 
V
N
 
N
T
 
G
W
 
Q
C
 
T
G
 
G
S
 
S
I
 
I
Y
 
Y
G
 
K
I
 
Q
R
 
S
E
 
I
A
 
P
D
 
L
W
 
A
N
 
N
V
 
A
C
 
M
L
 
R
P
 
K
P
 
P
L
 
G
S
 
E
W
 
W
Q
 
N
S
 
V
M
 
Y
E
 
D
I
 
I
E
 
I
F
 
Y
T
 
T
A
 
A
A
 
P
R
 
T
F
 
F
-
 
K
E
 
E
N
 
D
G
 
G
K
 
S
K
 
Y
V
 
R
T
 
T
P
 
H
A
 
P
V
 
T
I
 
V
S
 
T
V
 
V
T
 
I
Q
 
Q
N
 
N
G
 
G
V
 
V
L
 
V
L
 
L
H
 
Q
D
 
N
Q
 
H
V
 
T
E
 
T
L
 
I
P
 
L
S
 
G
G
 
T
T
 
T
G
 
E
G
 
W
G
 
I
P
 
G
A
 
F
G
 
P
P
 
Q
R
 
V
P
 
K
E
 
K
V
 
H
G
 
G
E
 
A
G
 
G
P
 
P
I
 
I
Y
 
I
L
 
L
Q
|
Q
N
 
S
H
 
H
G
 
G
N
 
D
P
 
P
N
 
S
R
 
E
-
 
P
-
 
I
-
 
S
F
 
F
R
 
R
N
 
N
I
 
I
W
 
W
I
 
I

Query Sequence

>557004_164_355
AIVLFDGSNTQAWQNGKIEDGVLKAGARTKDTFRDFRLYLEFMIPLKPEPPISHPHRGNS
GVFAVGAYEVQISDNFGLDPDPRAWQDMDILKPVNTWCGSIYGIREADWNVCLPPLSWQS
MEIEFTAARFENGKKVTPAVISVTQNGVLLHDQVELPSGTGGGPAGPRPEVGEGPIYLQN
HGNPNRFRNIWI

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory