SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 5635396_34_225 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
29% identity, 98% coverage: 4:192/192 of query aligns to 46:238/240 of 4qhzC

query
sites
4qhzC
L
 
V
L
 
L
F
 
F
D
 
D
G
 
G
R
 
K
S
 
D
L
 
L
E
 
S
G
 
A
W
 
W
R
 
E
G
 
S
F
 
V
K
 
K
T
 
G
P
 
G
E
 
A
P
 
-
D
 
-
A
 
A
G
 
E
W
 
W
T
 
D
V
 
V
T
 
H
D
 
D
G
 
G
M
 
V
L
 
F
G
 
T
P
 
V
D
 
N
P
 
K
K
 
K
T
 
K
S
 
G
R
 
-
D
 
D
I
 
I
M
 
Q
T
 
T
K
 
K
E
 
Q
T
 
K
F
 
F
G
 
N
D
 
D
F
 
F
E
 
Q
L
 
M
A
 
H
F
 
I
D
 
E
W
 
W
K
 
Q
V
 
V
-
 
P
-
 
T
-
 
N
-
 
I
-
 
T
-
 
G
-
 
E
-
 
S
G
 
Q
P
 
S
K
 
R
G
 
G
N
|
N
S
|
S
G
 
G
V
 
I
M
 
F
F
 
L
R
 
-
V
 
-
T
 
-
E
 
-
A
 
-
G
 
-
T
 
-
Q
 
-
T
 
-
Y
 
-
Q
 
Q
S
 
G
G
 
M
P
 
Y
E
|
E
Y
 
V
Q
|
Q
I
 
V
V
 
L
D
 
D
N
 
C
A
 
Y
R
 
N
G
 
N
E
 
P
P
 
T
V
 
Y
V
 
V
E
 
N
-
 
G
Q
 
Q
A
 
T
G
 
G
A
 
S
L
 
I
Y
 
Y
G
 
K
L
 
Q
Y
 
S
A
 
I
P
 
P
T
 
L
T
 
A
D
 
N
A
 
A
T
 
M
R
 
R
P
 
K
V
 
P
G
 
G
E
 
E
F
 
W
N
 
N
H
 
V
S
 
Y
R
 
D
L
 
I
V
 
I
L
 
Y
R
 
T
-
 
A
-
 
P
-
 
T
-
 
F
-
 
K
-
 
E
-
 
D
G
 
G
G
 
S
K
 
Y
G
 
R
E
 
T
H
 
H
W
 
-
L
 
-
N
 
P
G
 
T
V
 
V
K
 
T
V
 
V
A
 
I
E
 
Q
Y
 
N
D
 
G
L
 
V
D
 
V
S
 
L
D
 
Q
A
 
N
F
 
H
R
 
T
A
 
T
K
 
I
V
 
L
A
 
G
A
 
T
T
 
T
K
 
E
F
 
W
R
 
I
A
 
G
W
 
F
P
 
P
Q
 
Q
F
 
V
A
 
K
A
 
K
A
 
H
K
 
G
S
 
A
G
 
G
H
 
P
I
 
I
A
 
I
I
 
L
Q
|
Q
N
 
S
H
 
H
G
 
G
D
 
D
-
 
P
-
 
S
-
 
E
P
 
P
V
 
I
F
 
S
F
 
F
R
 
R
N
 
N
I
 
I
K
 
W
I
 
I
R
 
R

Query Sequence

>5635396_34_225
GWRLLFDGRSLEGWRGFKTPEPDAGWTVTDGMLGPDPKTSRDIMTKETFGDFELAFDWKV
GPKGNSGVMFRVTEAGTQTYQSGPEYQIVDNARGEPVVEQAGALYGLYAPTTDATRPVGE
FNHSRLVLRGGKGEHWLNGVKVAEYDLDSDAFRAKVAATKFRAWPQFAAAKSGHIAIQNH
GDPVFFRNIKIR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory