SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 5650395_26_219 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
25% identity, 98% coverage: 4:194/194 of query aligns to 46:238/240 of 4qhzC

query
sites
4qhzC
L
 
V
L
 
L
F
 
F
D
 
D
G
 
G
S
 
K
S
 
D
L
 
L
D
 
S
G
 
A
W
 
W
R
 
E
G
 
S
F
 
V
K
 
K
S
 
G
E
 
G
R
 
A
P
 
A
D
 
E
K
 
-
N
 
-
W
 
W
R
 
D
V
 
V
E
 
H
D
 
D
G
 
G
A
 
V
L
 
F
V
 
T
L
 
V
R
 
N
G
 
K
K
 
K
A
 
K
G
 
G
D
 
D
L
 
I
V
 
Q
T
 
T
Q
 
K
E
 
Q
A
 
K
F
 
F
G
 
N
D
 
D
F
 
F
E
 
Q
L
 
M
T
 
H
L
 
I
E
 
E
W
 
W
K
 
Q
V
 
V
A
 
P
E
 
T
G
 
N
A
 
I
N
 
T
S
 
G
G
 
E
V
 
S
I
 
Q
Y
 
S
R
 
R
V
 
-
G
 
-
L
 
-
G
 
G
E
x
N
A
x
S
N
 
G
T
 
I
F
 
F
T
 
L
T
 
Q
G
 
G
P
 
M
-
 
Y
E
|
E
Y
 
V
Q
|
Q
V
 
V
L
 
L
D
 
D
N
 
C
V
 
Y
K
 
-
A
 
-
H
 
-
D
 
-
N
 
N
H
 
N
P
 
P
A
 
T
-
 
Y
-
 
V
S
 
N
H
 
G
R
 
Q
A
 
T
G
 
G
A
 
S
L
 
I
Y
 
Y
D
 
K
L
 
Q
E
 
S
G
 
I
I
 
P
E
 
L
E
 
A
D
 
N
V
 
A
T
 
M
R
 
R
P
 
K
V
 
P
G
 
G
E
 
E
W
 
W
N
 
N
Q
 
V
A
 
Y
R
 
D
I
 
I
V
 
I
V
 
Y
S
 
T
G
 
A
W
 
P
R
 
T
V
 
F
Q
 
K
H
 
E
W
 
D
L
 
G
N
 
S
G
 
Y
R
 
R
-
 
T
-
 
H
-
 
P
-
 
T
-
 
V
Q
 
T
I
 
V
V
 
I
D
 
Q
V
 
N
D
 
G
L
 
V
A
 
V
S
 
L
P
 
Q
A
 
N
G
 
H
K
 
T
A
 
T
L
 
I
I
 
L
A
 
G
A
 
T
S
 
T
K
 
E
F
 
W
K
 
I
H
 
G
W
 
F
E
 
P
K
 
Q
F
 
V
A
 
K
S
 
K
L
 
H
A
 
G
R
 
A
G
 
G
H
 
P
L
 
I
A
 
I
L
 
L
Q
|
Q
D
 
S
H
 
H
G
 
G
D
 
D
-
 
P
-
 
S
-
 
E
V
 
P
V
 
I
S
 
S
Y
 
F
R
 
R
A
 
N
I
 
I
K
 
W
L
 
I
R
 
R

Query Sequence

>5650395_26_219
GWRLLFDGSSLDGWRGFKSERPDKNWRVEDGALVLRGKAGDLVTQEAFGDFELTLEWKVA
EGANSGVIYRVGLGEANTFTTGPEYQVLDNVKAHDNHPASHRAGALYDLEGIEEDVTRPV
GEWNQARIVVSGWRVQHWLNGRQIVDVDLASPAGKALIAASKFKHWEKFASLARGHLALQ
DHGDVVSYRAIKLR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory