SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 6000757_65_257 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
43% identity, 100% coverage: 1:193/193 of query aligns to 44:238/240 of 4qhzC

query
sites
4qhzC
A
 
A
V
 
I
V
 
V
I
 
L
F
 
F
D
 
D
G
 
G
G
 
K
S
 
D
T
 
L
D
 
S
A
 
A
L
 
W
V
 
E
S
 
S
K
 
V
D
 
K
G
 
G
K
 
G
P
 
A
C
 
A
P
 
E
W
 
W
K
 
D
V
 
V
E
 
H
N
 
D
G
 
G
E
 
V
L
 
F
L
 
T
I
 
V
-
 
N
-
 
K
A
 
K
G
 
K
G
 
G
D
 
D
C
 
I
W
 
Q
T
 
T
K
 
K
E
 
Q
Q
 
K
F
 
F
A
 
N
S
 
D
C
 
F
Q
 
Q
L
 
M
H
 
H
I
 
I
E
 
E
W
 
W
M
 
Q
S
 
V
A
 
P
P
 
T
E
 
N
T
 
I
K
 
T
G
 
G
N
 
E
S
 
S
Q
 
Q
K
 
S
K
 
R
G
 
G
N
|
N
A
x
S
G
 
G
V
 
I
F
 
F
F
 
L
M
 
Q
D
 
G
R
 
M
Y
 
Y
E
|
E
C
 
V
Q
|
Q
M
 
V
L
 
L
D
 
D
C
 
C
Y
 
Y
N
 
N
N
 
N
P
 
P
T
 
T
Y
 
Y
A
 
V
D
 
N
G
 
G
M
 
Q
T
 
T
G
 
G
C
 
S
I
 
I
Y
 
Y
G
 
K
Q
 
Q
T
 
S
P
 
I
P
 
P
L
 
L
V
 
A
N
 
N
A
 
A
V
 
M
R
 
R
P
 
K
A
 
P
G
 
G
E
 
E
W
 
W
Q
 
N
T
 
V
Y
 
Y
D
 
D
I
 
I
I
 
I
F
 
Y
T
 
T
A
 
A
P
 
P
K
 
T
L
 
F
K
 
K
-
 
E
D
 
D
G
 
G
K
 
S
V
 
Y
V
 
R
E
 
T
P
 
H
A
 
P
Y
 
T
V
 
V
T
 
T
T
 
V
F
 
I
V
 
Q
N
 
N
G
 
G
V
 
V
C
 
V
V
 
L
Q
 
Q
V
 
N
H
 
H
T
 
T
K
 
T
I
 
I
M
 
L
G
 
G
P
 
T
T
 
T
K
 
E
H
 
W
K
 
I
N
 
G
I
 
-
T
 
-
N
 
-
Y
 
-
D
 
-
G
 
-
V
 
-
F
 
F
P
 
P
E
 
Q
-
 
V
-
 
K
-
 
K
-
 
H
-
 
G
K
 
A
A
 
G
P
 
P
V
 
I
R
 
I
L
 
L
Q
|
Q
D
 
S
H
 
H
K
 
-
N
 
G
D
 
D
P
 
P
-
 
S
-
 
E
P
 
P
V
 
I
R
 
S
V
 
F
R
 
R
N
 
N
Y
 
I
W
 
W
V
 
I
R
 
R

Query Sequence

>6000757_65_257
AVVIFDGGSTDALVSKDGKPCPWKVENGELLIAGGDCWTKEQFASCQLHIEWMSAPETKG
NSQKKGNAGVFFMDRYECQMLDCYNNPTYADGMTGCIYGQTPPLVNAVRPAGEWQTYDII
FTAPKLKDGKVVEPAYVTTFVNGVCVQVHTKIMGPTKHKNITNYDGVFPEKAPVRLQDHK
NDPPVRVRNYWVR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory