SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 6003772_60_269 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

Q09165 Mesocentin from Caenorhabditis elegans (see 2 papers)
37% identity, 37% coverage: 59:136/210 of query aligns to 11628:11712/13100 of Q09165

query
sites
Q09165
G
 
G
P
 
P
E
 
D
G
 
G
S
 
S
V
 
V
G
 
L
G
 
P
T
 
T
W
 
D
L
 
T
A
 
S
S
 
G
I
 
N
E
 
Y
A
 
I
Q
 
Y
I
 
P
I
 
I
E
 
T
G
 
G
G
 
P
T
 
D
G
 
G
D
 
N
I
 
V
L
 
L
-
 
P
-
 
T
-
 
D
-
 
S
-
 
N
-
 
G
-
 
K
-
 
P
V
 
V
L
 
Y
P
 
P
G
 
V
K
 
F
T
 
N
E
 
E
D
 
D
G
 
G
T
 
T
P
 
Q
V
 
L
P
 
P
T
 
T
T
 
D
M
 
S
T
 
T
G
 
G
E
 
S
F
 
A
V
 
I
K
 
-
D
 
D
R
 
Q
D
 
D
G
 
G
E
 
E
L
 
L
V
 
V
W
 
S
Q
 
T
R
 
D
G
 
S
S
 
T
E
 
S
K
 
G
L
 
V
P
 
P
M
 
L
G
 
A
T
 
K
D
 
D
G
 
G
K
 
S
P
 
P
K
 
L
R
 
P
L
 
T
N
 
N
W
 
S
A
 
A

Sites not aligning to the query:

Query Sequence

>6003772_60_269
WTFGEEGQLKISGRGFGYLATKADYKDYHLVIEYKFPGPTMGSRENKARDNGVLVHGHGP
EGSVGGTWLASIEAQIIEGGTGDILVLPGKTEDGTPVPTTMTGEFVKDRDGELVWQRGSE
KLPMGTDGKPKRLNWAKRDPDWADKAGFYGKNDVQSKFHEWTRMEVVAEGDKLTYYVNGV
EVNEALECKPAEGRICLQTEGAEMLVRRFE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory