SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 6005885_41_249 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
30% identity, 72% coverage: 59:209/209 of query aligns to 81:238/240 of 4qhzC

query
sites
4qhzC
D
 
D
I
 
I
V
 
Q
T
 
T
K
 
K
K
 
Q
P
 
K
Y
 
F
R
 
N
D
 
D
F
 
F
R
 
Q
L
 
M
H
 
H
I
 
I
E
 
E
F
 
W
Y
 
Q
I
 
V
-
 
P
-
 
T
-
 
N
-
 
I
-
 
T
-
 
G
-
 
E
T
 
S
K
 
Q
P
 
S
G
 
R
G
 
G
N
|
N
S
|
S
G
 
G
V
 
I
Y
 
F
L
 
L
Q
 
Q
N
 
G
R
 
M
Y
 
Y
E
|
E
I
 
V
Q
|
Q
V
 
V
L
 
L
D
 
D
G
 
C
-
 
Y
-
 
N
-
 
N
-
 
P
D
 
T
K
 
Y
T
 
V
K
 
N
H
 
G
G
 
Q
M
 
T
G
 
G
A
 
S
V
 
I
I
 
Y
N
 
K
E
 
Q
T
 
S
E
 
I
S
 
P
P
 
L
Y
 
A
D
 
N
A
 
A
Y
 
M
L
 
R
G
 
K
V
 
P
G
 
G
K
 
E
W
 
W
N
 
N
S
 
V
Y
 
Y
D
 
D
I
 
I
V
 
I
F
 
Y
R
 
T
A
 
A
A
 
P
R
 
T
F
 
F
-
 
K
E
 
E
D
 
D
G
 
G
K
 
S
L
 
Y
V
 
R
E
 
T
K
 
H
P
 
P
L
 
T
V
 
V
T
 
T
M
 
V
Y
 
I
F
 
Q
N
 
N
G
 
G
K
 
V
K
 
V
V
 
L
H
 
Q
K
 
N
N
 
H
V
 
T
A
 
T
I
 
I
-
 
L
-
 
G
S
 
T
K
 
T
V
 
E
W
 
W
-
 
I
G
 
G
G
 
F
P
 
P
N
 
Q
S
 
V
G
 
K
V
 
K
D
 
H
G
 
G
G
 
A
N
 
G
N
 
P
N
 
-
G
 
-
F
 
-
G
 
-
I
 
-
T
 
-
D
 
-
T
 
-
P
 
-
Q
 
-
G
 
-
L
 
I
K
 
I
L
 
L
Q
|
Q
C
 
S
E
 
H
G
 
G
-
 
D
-
 
P
-
 
S
H
 
E
D
 
P
V
 
I
R
 
S
Y
 
F
R
 
R
N
 
N
A
 
I
W
 
W
I
 
I
K
 
R

Query Sequence

>6005885_41_249
VILDGSRQMLDEKWTYWEGPRFASALPIKWKVVEDPVDGGSAIMTDDRAADKGKYGAADI
VTKKPYRDFRLHIEFYITKPGGNSGVYLQNRYEIQVLDGDKTKHGMGAVINETESPYDAY
LGVGKWNSYDIVFRAARFEDGKLVEKPLVTMYFNGKKVHKNVAISKVWGGPNSGVDGGNN
NGFGITDTPQGLKLQCEGHDVRYRNAWIK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory