SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 6254985_35_202 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
27% identity, 98% coverage: 5:168/168 of query aligns to 47:238/240 of 4qhzC

query
sites
4qhzC
L
 
L
I
 
F
A
 
D
A
 
G
H
 
K
D
 
D
L
 
L
S
 
S
G
 
A
W
 
W
Q
 
E
N
 
S
A
 
V
A
 
K
T
 
G
A
 
G
A
 
A
E
 
A
H
 
E
W
 
W
K
 
D
V
 
V
E
 
H
N
 
D
G
 
G
E
 
V
L
 
F
I
 
T
N
 
V
D
 
N
G
 
K
Q
 
K
G
 
K
A
 
G
D
 
D
L
 
I
V
 
Q
T
 
T
A
 
K
K
 
Q
S
 
K
Y
 
F
R
 
N
N
 
D
F
 
F
E
 
Q
L
 
M
R
 
H
L
 
I
E
 
E
W
 
W
K
 
Q
I
 
V
P
 
P
V
 
T
-
 
N
-
 
I
-
 
T
-
 
G
-
 
E
-
 
S
-
 
Q
-
 
S
R
 
R
G
 
G
D
x
N
S
|
S
G
 
G
V
 
I
Y
 
F
L
 
L
P
 
Q
G
 
G
G
 
M
Q
 
Y
Q
x
E
V
 
V
Q
|
Q
I
 
V
W
 
L
-
 
D
-
 
C
-
 
Y
-
 
N
-
 
N
-
 
P
A
 
T
K
 
Y
D
 
V
S
 
N
G
 
G
S
 
Q
G
 
T
G
 
G
F
 
S
V
 
I
Y
 
Y
N
 
K
H
 
Q
K
 
S
Y
 
I
T
 
-
V
 
-
S
 
-
P
 
P
S
 
L
V
 
A
V
 
N
A
 
A
D
 
M
K
 
R
P
 
K
L
 
P
G
 
G
E
 
E
W
 
W
N
 
N
T
 
V
F
 
Y
V
 
D
I
 
I
R
 
I
L
 
Y
V
 
T
-
 
A
-
 
P
-
 
T
-
 
F
-
 
K
-
 
E
D
 
D
G
 
G
K
 
S
V
 
Y
-
 
R
-
 
T
-
 
H
-
 
P
T
 
T
V
 
V
T
 
T
-
 
V
L
 
I
N
 
Q
D
 
N
K
 
G
V
 
V
V
 
V
M
 
L
Q
 
Q
D
 
N
V
 
H
P
 
T
V
 
T
E
 
I
K
 
L
G
 
G
F
 
T
D
 
T
-
 
E
-
 
W
-
 
I
-
 
G
-
 
F
P
 
P
P
 
Q
M
 
V
R
 
K
G
 
K
P
 
H
E
 
G
E
 
A
G
 
G
A
 
P
L
 
I
R
 
I
L
 
L
Q
|
Q
K
 
S
-
 
H
-
 
G
S
 
D
P
 
P
H
 
S
N
 
E
V
 
P
M
 
I
T
 
-
T
 
S
F
 
F
R
 
R
N
 
N
I
 
I
F
 
W
I
 
I
R
 
R

Query Sequence

>6254985_35_202
GFTPLIAAHDLSGWQNAATAAEHWKVENGELINDGQGADLVTAKSYRNFELRLEWKIPVR
GDSGVYLPGGQQVQIWAKDSGSGGFVYNHKYTVSPSVVADKPLGEWNTFVIRLVDGKVTV
TLNDKVVMQDVPVEKGFDPPMRGPEEGALRLQKSPHNVMTTFRNIFIR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory