SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 6806740_40_249 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
24% identity, 99% coverage: 4:210/210 of query aligns to 46:238/240 of 4qhzC

query
sites
4qhzC
L
 
V
L
 
L
F
 
F
N
 
D
G
 
G
K
 
K
N
 
D
F
 
L
D
 
S
G
 
A
W
 
W
H
 
E
S
 
S
F
 
V
G
 
-
Q
 
-
K
 
K
G
 
G
V
 
G
G
 
A
K
 
A
D
 
E
W
 
W
T
 
D
I
 
V
D
 
H
H
 
D
G
 
G
A
 
V
I
 
F
R
 
T
L
 
V
K
 
N
K
 
K
A
 
K
K
 
K
G
 
G
E
 
-
N
 
-
Q
 
-
A
 
-
N
 
-
S
 
-
A
 
-
D
 
D
L
 
I
T
 
Q
T
 
T
N
 
K
G
 
Q
E
 
K
Y
 
F
G
 
N
N
 
D
F
 
F
D
 
Q
L
 
M
R
 
H
V
 
I
E
 
E
W
 
W
K
 
Q
A
 
V
E
 
P
P
 
T
C
 
N
V
 
I
-
 
T
-
 
G
-
 
E
-
 
S
-
 
Q
-
 
S
-
 
R
-
 
G
D
x
N
S
|
S
G
 
G
I
 
I
-
 
F
-
 
L
-
 
Q
-
 
G
M
 
M
F
 
Y
H
x
E
V
 
V
H
x
Q
E
 
V
S
 
L
A
 
D
K
 
C
Y
 
Y
Q
 
N
Q
 
N
P
 
P
-
 
T
Y
 
Y
Q
 
V
T
 
N
G
 
G
P
 
-
E
 
-
M
 
-
Q
 
-
I
 
-
A
 
-
D
 
-
Y
 
-
A
 
-
C
 
-
T
 
-
V
 
-
P
 
-
D
 
Q
S
 
T
R
 
G
T
 
S
L
 
I
Y
 
Y
E
 
K
R
 
Q
S
 
S
G
 
I
D
 
P
M
 
L
F
 
A
G
 
N
L
 
A
I
 
M
A
 
R
D
 
K
P
 
P
Y
 
-
E
 
-
W
 
-
V
 
-
K
 
-
P
 
-
A
 
-
G
 
G
Q
 
E
W
 
W
N
 
N
N
 
V
Y
 
Y
E
 
D
I
 
I
K
 
-
V
 
I
Y
 
Y
N
 
T
N
 
A
H
 
P
V
 
T
Q
 
-
F
 
F
F
 
K
T
 
E
D
 
D
G
 
G
-
 
S
-
 
Y
-
 
R
-
 
T
H
 
H
K
 
P
V
 
T
V
 
V
D
 
T
T
 
V
Q
 
I
I
 
Q
G
 
N
D
 
G
A
 
V
A
 
V
W
 
L
K
 
Q
N
 
N
-
 
H
-
 
T
-
 
T
L
 
I
V
 
L
A
 
G
H
 
T
S
 
T
K
 
E
F
 
W
A
 
I
G
 
G
W
 
F
P
 
P
G
 
Q
F
 
V
A
 
K
G
 
K
Y
 
H
P
 
G
E
 
A
G
 
G
H
 
P
I
 
I
S
 
I
L
 
L
Q
|
Q
G
 
S
S
 
-
E
 
-
V
 
-
K
 
H
G
 
G
K
 
D
S
 
P
E
 
S
V
 
E
K
 
P
L
 
I
W
 
S
F
 
F
R
 
R
N
 
N
I
 
I
M
 
W
I
 
I
R
 
R

Query Sequence

>6806740_40_249
GWQLLFNGKNFDGWHSFGQKGVGKDWTIDHGAIRLKKAKGENQANSADLTTNGEYGNFDL
RVEWKAEPCVDSGIMFHVHESAKYQQPYQTGPEMQIADYACTVPDSRTLYERSGDMFGLI
ADPYEWVKPAGQWNNYEIKVYNNHVQFFTDGHKVVDTQIGDAAWKNLVAHSKFAGWPGFA
GYPEGHISLQGSEVKGKSEVKLWFRNIMIR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory