SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 6936537 FitnessBrowser__SB2B:6936537 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

3iehA Crystal structure of putative metallopeptidase (yp_001051774.1) from shewanella baltica os155 at 2.45 a resolution
67% identity, 98% coverage: 3:270/274 of query aligns to 1:268/268 of 3iehA

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3iehA
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A

4okoA Crystal structure of francisella tularensis rep34 (rapid encystment phenotype protein 34 kda) (see paper)
32% identity, 32% coverage: 47:134/274 of query aligns to 56:143/290 of 4okoA

query
sites
4okoA
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G

Sites not aligning to the query:

Query Sequence

>6936537 FitnessBrowser__SB2B:6936537
MSRSPFQTFVWRSEIFECQSTDIQRFYSLLAIETERLGLGSKILGQAGHHPLYLLQSPGQ
KAGLPNLLISAGFHGEESAGPWGLLHFLSQLDGELFKRVNLSVLPLVNPTGFAKGHRFNE
LGENPNRGFFIENGKAKPGADTSAEGRILLEHAHLLQVASRDGILTCHEDVLMTDTYVYT
FEPSQAPGRFSHSLRDALGQYFPIAADGDVDNCPVRSGVIFNHFDTSFESFLVRSGARVG
CCSETPGQQPLDQRILANAAAMNTFVNMLAPELS

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory