Comparing 6936959 FitnessBrowser__SB2B:6936959 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
P69786 PTS system glucose-specific EIICB component; EIICB-Glc; EII-Glc; EC 2.7.1.199 from Escherichia coli (strain K12) (see 5 papers)
44% identity, 96% coverage: 17:481/485 of query aligns to 3:474/477 of P69786
P09323 PTS system N-acetylglucosamine-specific EIICBA component; EIICBA-Nag; EII-Nag; EC 2.7.1.193 from Escherichia coli (strain K12) (see paper)
34% identity, 94% coverage: 22:479/485 of query aligns to 6:464/648 of P09323
Sites not aligning to the query:
6bvgA Crystal structure of bcmalt t280c-e54c crosslinked by divalent mercury (see paper)
29% identity, 78% coverage: 20:398/485 of query aligns to 2:442/447 of 6bvgA
1o2fB Complex of enzyme iiaglc and iibglc phosphocarrier protein hpr from escherichia coli nmr, restrained regularized mean structure (see paper)
55% identity, 15% coverage: 411:481/485 of query aligns to 5:75/77 of 1o2fB
>6936959 FitnessBrowser__SB2B:6936959
MAPASSARPERLTRLNRHWFRFAQRLSQTLLIPIAILPAAGVMIGIATNPLPFIPDVANV
LMLSVGKLIFDIMPMLFAIAVAIGFCRDQGIAAFSAAFGYGVLLSTLAAAAKVYHLPSHI
VWGTPTIDTGIAGGMLVGGITCVAVRLSEKLRLPAVFSFFEGRRSAPLIMIPLVMLLAVM
LAFIWPPLALSIERLSDWAVYQEPAIAFGFYGMVERLLLPLGLHHIWNAPFYLEVGQYAH
DGEIVRGEMARYFAGDPSAGNLAGGYLIKMWGLPAAALAIWRCADRNQRNRVAGVMLSAA
TASWLTGVTEPIEFAFLFVAPLLYLCHALLTGLAYSIAILLDMHHSVVFSHGLVDFVLLF
PQSSNTHWIWFLGPLTFVIYYILFRASILAFNLKTPGRFEADTGQKRNLIAIVSALGGGG
NIADLSACLTRLRISVADPSQVDRQRLMSLGAKGVIVVGSGVQLVFGTKAETLRKLLQRY
LDTRS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory