Comparing 6936962 FitnessBrowser__SB2B:6936962 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 9 hits to proteins with known functional sites (download)
3tdtA Complex of tetrahydrodipicolinate n-succinyltransferase with 2-amino- 6-oxopimelate and coenzyme a (see paper)
79% identity, 100% coverage: 1:274/274 of query aligns to 1:274/274 of 3tdtA
2tdtA Complex of tetrahydrodipicolinate n-succinyltransferase with 2- aminopimelate and coenzyme a (see paper)
79% identity, 100% coverage: 1:274/274 of query aligns to 1:274/274 of 2tdtA
1kgtA Crystal structure of tetrahydrodipicolinate n-succinyltransferase in complex with pimelate and succinyl-coa (see paper)
79% identity, 100% coverage: 1:274/274 of query aligns to 1:274/274 of 1kgtA
1kgqA Crystal structure of tetrahydrodipicolinate n-succinyltransferase in complex with l-2-aminopimelate and succinamide-coa (see paper)
79% identity, 100% coverage: 1:274/274 of query aligns to 1:274/274 of 1kgqA
3r8yA Structure of the bacillus anthracis tetrahydropicolinate succinyltransferase
42% identity, 33% coverage: 104:194/274 of query aligns to 77:168/203 of 3r8yA
8bpxy Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (see paper)
29% identity, 54% coverage: 83:229/274 of query aligns to 49:186/265 of 8bpxy
Sites not aligning to the query:
8befy Cryo-em structure of the arabidopsis thaliana i+iii2 supercomplex (ci membrane core) (see paper)
29% identity, 54% coverage: 83:229/274 of query aligns to 49:186/265 of 8befy
Sites not aligning to the query:
7ar7y Cryo-em structure of arabidopsis thaliana complex-i (open conformation) (see paper)
29% identity, 54% coverage: 83:229/274 of query aligns to 48:185/268 of 7ar7y
Sites not aligning to the query:
7aqqy Cryo-em structure of arabidopsis thaliana complex-i (membrane core) (see paper)
29% identity, 54% coverage: 83:229/274 of query aligns to 48:185/268 of 7aqqy
>6936962 FitnessBrowser__SB2B:6936962
MEALRQRIEAAFEARANITPSSVEPGVRADVETVINMLDKGEMRVAEKIDGQWHVNQWLK
KAVLLSFRIFDNGVIEGGETKYFDKVPMKFADYDEARFRAEAIRVVPPAAVRKGSFIGKN
TVLMPSYVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQAGPTIIED
NCFIGARSEIVEGVVVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGTLPS
SCGKYNLYAAIIVKKVDEKTRGKVGINELLRIVD
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory