SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing 6937501 FitnessBrowser__SB2B:6937501 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

Q39232 Sucrose transport protein SUC1; AtSUC1; Sucrose permease 1; Sucrose-proton symporter 1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
31% identity, 31% coverage: 6:164/518 of query aligns to 20:197/513 of Q39232

query
sites
Q39232

S

S

P

P

L

E

K

D

D

F

K

D

P

Q

P

P

L

S

S

P

F

L

W

R

Q

K

I

I

F

I

N

S

M

V

C

A

F

S

G

I

F

A

L

A

G

G

I

V

Q

Q

F

F

G

G

F

W

A

A

L

L

Q

Q

N

L

A

S

N

L

V

L

S

T

R

P

I

Y

F

V

Q

Q

T

L

L

L

G

G

A

I

S

P

I
x
H

D

K

D

W

I

S

P

S

I

L

L

I

W

W

I

L

A

C

G

G

P

P

L

V

T

S

G

G

L

M

L

I

V

V

Q

Q

P

P

I

I

V

V

G

G

Y

F

L

H

S

S

D

D

N

R

T

C

W

R

N

S

R

K

F

F

G

G

R

R

R

R

R

R

P

P

Y

F

F

I

L

A

I

T

G

G

A

A

V

A

L

L

T

V

T

A

L

V

A

A

L

V

F

F

I

L

M

I

P

G

H

Y

S

A

P

A

Y

D

L

F

W

G

V

Y

A

K

A

M

G

G

M

D

-

K

-

L

-

E

-

E

-

K

-

V

-

K

-

V

-

R

-

A

-

I

-

G

-

I

-

F

-

A

-

L

-

G

L

F

W

W

I

I

M

L

D

D

A

V

S

A

I

N

N

N

I

T

A

L

M

Q

E

G

P

P

F

C

R

R

A

A

F

F

V

L

G

A

D

D

-

L

K

A

L

A

P

G

E

D

S

A

Q

K

R

R

A

T

K

R

-

V

G

A

F

N

A

A

M

F

Q

F

S

S

F

F

F

F

I

M

G

A

I

V

G

G

A

N

V

V

V

L

A

G

S

Y

A

A

H65 (≠ I51) mutation to C: No sucrose transport activity, high instability.; mutation H->D,G,L,Y: Reduced sucrose transport activity.; mutation to K: Enhanced sucrose transport activity.; mutation to Q: Reduced sensitivity to DEPC.; mutation to R: Enhanced sucrose transport activity, reduced sensitivity to DEPC.; mutation to S: Reduced sucrose transport activity, reduced sensitivity to DEPC.

Query Sequence

>6937501 FitnessBrowser__SB2B:6937501
MTSHTSPLKDKPPLSFWQIFNMCFGFLGIQFGFALQNANVSRIFQTLGASIDDIPILWIA
GPLTGLLVQPIVGYLSDNTWNRFGRRRPYFLIGAVLTTLALFIMPHSPYLWVAAGMLWIM
DASINIAMEPFRAFVGDKLPESQRAKGFAMQSFFIGIGAVVASALPYLLSNFAGVSNIAP
EGQIADTVRYSFYLGGVVLLAAVGWTIISSREYSPEELSRFKGHEQSGFERHHGRTPEAY
RKGALVWSTLGLAITAATFAADLDKQLYLLGLGVFAFGPLQWYCAQRLSAAGKRSGKLGM
VFEVVDDLFHMPHAMKRLALVQFFSWFALFAMWIYTTAAVTSYHYHSSDVLSKAYNDGAD
WVGVLFASYNGFAALAAMVIPLQCMLLGLKGAHIMNLCLGGIGLMSFYLIADPALLWIPM
IGVGFAWASILSVPYAILSTSLPGNKLGVYMGIFNFFIVIPQLVAATVLGFILKSLFGNE
PIYALILGGSAMILAALSVLFVPAREQEPGRSNAAAQV

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory