SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 6938323 FitnessBrowser__SB2B:6938323 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

8ahxC Cryo-em structure of the nitrogen-fixation associated nadh:ferredoxin oxidoreductase rnf from azotobacter vinelandii
33% identity, 23% coverage: 278:385/466 of query aligns to 339:439/476 of 8ahxC

query
sites
8ahxC
P
 
P
G
 
S
G
 
T
E
 
E
M
 
V
H
 
P
V
 
V
I
 
I
I
 
K
V
 
G
D
 
A
N
 
T
G
 
G
R
 
L
S
 
L
A
 
A
M
 
L
M
 
A
R
 
R
D
 
H
K
 
E
L
 
L
L
 
P
G
 
N
-
 
K
E
 
D
A
 
P
L
 
A
K
 
P
C
|
C
I
|
I
R
|
R
C
|
C
G
x
A
G
x
S
C
|
C
L
 
V
N
 
D
T
 
A
C
|
C
P
|
P
V
 
M
Y
 
-
R
 
-
R
 
-
S
 
-
G
 
-
G
 
-
Y
 
-
S
 
-
Y
 
-
G
 
G
H
 
L
T
 
T
I
 
-
P
 
-
G
 
-
P
 
P
I
 
L
G
 
D
I
 
M
A
 
A
V
 
L
G
 
Y
A
 
A
D
 
R
E
 
A
D
 
D
D
 
D
T
 
Y
H
 
D
-
 
G
S
 
A
S
 
S
P
 
E
W
 
Y
A
 
G
-
 
L
-
 
R
-
 
D
C
|
C
T
x
I
L
|
L
C
|
C
G
|
G
S
 
C
C
|
C
S
 
S
F
 
Y
V
 
V
C
|
C
P
|
P
T
x
S
K
 
H
V
 
I
P
 
P
L
 
L
D
 
V
K
 
H
I
 
Y
I
 
F
F
 
Q
H
 
Y
R
 
A
R
 
K
R
 
G
L
 
Q
Y
 
Q
A
 
D
E
 
E
R
 
R
K
 
R
S
 
S

Sites not aligning to the query:

5odcC Heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus at 2.3 a resolution (see paper)
29% identity, 19% coverage: 297:386/466 of query aligns to 25:110/184 of 5odcC

query
sites
5odcC
D
 
D
K
 
D
L
 
V
L
 
V
G
 
S
E
 
S
A
 
L
L
 
K
K
 
A
C
|
C
I
x
Y
R
x
Q
C
|
C
G
|
G
G
 
T
C
|
C
L
 
T
N
 
G
T
 
S
C
|
C
P
|
P
V
 
S
Y
 
G
R
 
R
R
 
R
S
 
T
G
 
S
G
x
Y
Y
 
R
S
x
T
Y
 
R
G
 
K
H
 
V
T
 
I
I
 
R
P
 
K
G
 
A
P
 
L
I
 
L
G
 
G
I
 
M
A
 
D
V
 
D
G
 
V
A
 
L
D
 
D
E
 
S
D
 
D
D
 
D
T
 
I
H
 
-
S
 
-
S
 
-
P
 
-
W
 
W
A
 
K
C
|
C
T
|
T
L
x
T
C
|
C
G
x
Y
S
 
T
C
|
C
S
 
Y
F
 
E
V
 
R
C
|
C
P
|
P
T
 
R
K
 
D
V
|
V
P
 
K
L
 
V
D
 
T
K
 
E
I
 
I
I
 
I
F
 
K
H
 
T
R
 
I
R
 
R
R
 
N
L
 
L
Y
 
A
A
 
A
E
 
Q
R
 
K
K
 
G
S
 
N
L
 
M

5odcI Heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus at 2.3 a resolution (see paper)
29% identity, 19% coverage: 297:386/466 of query aligns to 25:110/173 of 5odcI

query
sites
5odcI
D
 
D
K
 
D
L
 
V
L
 
V
G
 
S
E
 
S
A
 
L
L
 
K
K
 
A
C
|
C
I
x
Y
R
x
Q
C
|
C
G
|
G
G
 
T
C
|
C
L
 
T
N
 
G
T
 
S
C
|
C
P
|
P
V
 
S
Y
 
G
R
 
R
R
 
R
S
 
T
G
 
S
G
x
Y
Y
x
R
S
x
T
Y
 
R
G
 
K
H
 
V
T
 
I
I
 
R
P
 
K
G
 
A
P
 
L
I
 
L
G
 
G
I
 
M
A
 
D
V
 
D
G
 
V
A
 
L
D
 
D
E
 
S
D
 
D
D
|
D
T
 
I
H
 
-
S
 
-
S
 
-
P
 
-
W
 
W
A
 
K
C
|
C
T
|
T
L
x
T
C
|
C
G
x
Y
S
 
T
C
|
C
S
 
Y
F
 
E
V
 
R
C
|
C
P
 
P
T
 
R
K
 
D
V
|
V
P
 
K
L
 
V
D
 
T
K
 
E
I
 
I
I
 
I
F
 
K
H
 
T
R
 
I
R
 
R
R
 
N
L
 
L
Y
 
A
A
 
A
E
 
Q
R
 
K
K
 
G
S
 
N
L
 
M

Query Sequence

>6938323 FitnessBrowser__SB2B:6938323
MQKVIQTHAKAADIFCRDESRVDWHSKALWVLREKRDRAASSLPEWETLRALGSQIKLHT
LNQLPGYLEAFEAKCLSQGVKVHWAKDGAEHNRIVHDILSRHGVKKLVKSKSMLTEECHL
NPFLEGKGIEVIDTDLGERIIQLNHQPPSHIVVPAIHMKKEEVGDLFHEKLGTPKGESDP
TRLTRAARAHLREQFLSADAAMTGVNMAVASEGAVIVCTNEGNADMGANLPKLQLHSMGI
DKIVPDLDSAAVLLRMLARNATGQPITTYSSLYRTPKPGGEMHVIIVDNGRSAMMRDKLL
GEALKCIRCGGCLNTCPVYRRSGGYSYGHTIPGPIGIAVGADEDDTHSSPWACTLCGSCS
FVCPTKVPLDKIIFHRRRLYAERKSLPYGKSGYMPLVGRFMASPLLLDTGMAAARIALKI
LPHSLLKPMSGAWGKYRELPAAPGSSFEGWVKKNRPELLVKSKGEK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory