Comparing 6938343 FitnessBrowser__SB2B:6938343 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 14 hits to proteins with known functional sites (download)
3wlxA Crystal structure of low-specificity l-threonine aldolase from escherichia coli
56% identity, 98% coverage: 4:331/336 of query aligns to 3:325/331 of 3wlxA
4lnmA Structure of escherichia coli threonine aldolase in complex with serine (see paper)
56% identity, 98% coverage: 4:331/336 of query aligns to 3:325/331 of 4lnmA
4rjyA Crystal structure of e. Coli l-threonine aldolase in complex with a non-covalently uncleaved bound l-serine substrate (see paper)
56% identity, 98% coverage: 4:331/336 of query aligns to 3:325/332 of 4rjyA
4lnlA Structure of escherichia coli threonine aldolase in complex with allo- thr (see paper)
56% identity, 98% coverage: 4:331/336 of query aligns to 3:325/332 of 4lnlA
4lnjA Structure of escherichia coli threonine aldolase in unliganded form (see paper)
56% identity, 98% coverage: 4:331/336 of query aligns to 3:325/332 of 4lnjA
O07051 L-allo-threonine aldolase; L-allo-TA; L-allo-threonine acetaldehyde-lyase; EC 4.1.2.49 from Aeromonas jandaei (see paper)
53% identity, 99% coverage: 4:336/336 of query aligns to 5:336/338 of O07051
3wgcB Aeromonas jandaei l-allo-threonine aldolase h128y/s292r double mutant (see paper)
53% identity, 99% coverage: 4:336/336 of query aligns to 4:333/333 of 3wgcB
3wgbD Crystal structure of aeromonas jandaei l-allo-threonine aldolase (see paper)
54% identity, 96% coverage: 4:325/336 of query aligns to 3:314/324 of 3wgbD
1jg8D Crystal structure of threonine aldolase (low-specificity)
47% identity, 97% coverage: 1:325/336 of query aligns to 1:329/344 of 1jg8D
Sites not aligning to the query:
1lw5B X-ray structure of l-threonine aldolase (low-specificity) in complex with glycine (see paper)
47% identity, 96% coverage: 4:325/336 of query aligns to 3:328/343 of 1lw5B
Sites not aligning to the query:
1lw4B X-ray structure of l-threonine aldolase (low-specificity) in complex with l-allo-threonine (see paper)
47% identity, 96% coverage: 4:325/336 of query aligns to 3:328/343 of 1lw4B
Sites not aligning to the query:
Q8RXU4 Low-specificity L-threonine aldolase 1; Threonine aldolase 1; EC 4.1.2.48 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
42% identity, 99% coverage: 4:336/336 of query aligns to 7:349/358 of Q8RXU4
5vyeB Crystal structure of l-threonine aldolase from pseudomonas putida
29% identity, 85% coverage: 5:289/336 of query aligns to 6:297/344 of 5vyeB
O50584 Low specificity L-threonine aldolase; Low specificity L-TA; EC 4.1.2.48 from Pseudomonas sp. (strain NCIMB 10558) (see paper)
28% identity, 85% coverage: 5:288/336 of query aligns to 8:298/346 of O50584
>6938343 FitnessBrowser__SB2B:6938343
MKADFRSDTVTQPTAAMRQAMSQAQVGDDVYGDDPTVNRLEAMAAEMLGFDAALFTSSGT
QANLLALMSHCERGDEYICGQDAHNYRFEGGGAAVLGSIQPQPLLNQADGTIALGDIEAA
IKPDDVHYARTRLLSLENTIGGKVLPMGYLANAQALAFNRGLKIHLDGARLANAAVALNK
PMAEIAGHFDSVSLCLSKGLCAPVGSLLLGDDRLIKKARRWRKMLGGGMRQAGILAAAGI
IALESQWQRLAEDHDNAALLGRELSMIDGFEVNTASIQTNMVFARVAEHIDIKHVAAELA
SLGFIISPAKNLRLVTHNDISRDAVLAFVAALKSAL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory