SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 6938907 FitnessBrowser__SB2B:6938907 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

1yleA The structure of arginine/ornithine succinyltransferase subunit ai from pseudomonas aeruginosa.
38% identity, 100% coverage: 1:339/339 of query aligns to 3:328/330 of 1yleA

query
sites
1yleA
M
 
M
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I
 
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Y
 
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D
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G
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V
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T
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D
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A
D
 
E
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L
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D
K
 
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I
A
 
L
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A
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S
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E
A
 
A
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S
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F
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A
K
 
A
V
 
E
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Y
P
 
N
Y
 
G
D
 
E
E
 
E
G
 
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Y
L
 
F
M
 
F
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V
L
 
L
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D
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A
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G
E
 
E
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G
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C
C
 
S
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A
L
 
I
E
 
V
A
 
A
A
 
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A
G
 
G
M
 
F
E
 
S
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E
A
 
P
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F
Y
 
Y
H
 
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L
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C
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T
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Y
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Y
 
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Y
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A
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M
 
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|
E
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E
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Q
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A
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M
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V

Query Sequence

>6938907 FitnessBrowser__SB2B:6938907
MLIIRPIRASDFDALYRIAVESGHGFTSLPVNEDLLRRKIARSEASFQKVVETPYDEGYL
MVLEDTQTQEVVGTCALEAAVGMEDAFYHYRLGTEVYHSQQINVRNEVETLTLCHDYTGA
AELCTLFLRGAYRKDNNGRMLSRSRFLFLAQHANRFGETVIAEMRGVSDENGNSPFYGWL
QKHFLGIDFVEADYLSGLGRKAFMAEMMPRNPVYVCLLPEEAQKVIGEVHTNTRPALSLL
RAEGFRCRGYVDIFDGGPTVECNLQDIRGVRESRLLTVRIGEMPASDDSFILSNTQLVDY
RATSVELMVSSDSDEVILSPELAAGLLVSDGEQVRVLAI

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory