SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 6939103 FitnessBrowser__SB2B:6939103 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

3pzlB The crystal structure of agmatine ureohydrolase of thermoplasma volcanium
29% identity, 44% coverage: 47:197/345 of query aligns to 21:152/293 of 3pzlB

query
sites
3pzlB
Q
 
E
G
 
E
A
 
A
R
 
K
F
 
Y
V
 
V
L
 
V
L
 
F
G
 
G
V
 
I
G
 
P
E
 
F
D
 
D
A
 
-
G
 
-
P
 
-
R
 
N
A
 
T
N
 
S
L
 
S
G
 
Y
R
 
R
G
 
R
G
 
G
A
 
S
T
 
K
N
 
Y
A
 
A
F
 
P
E
 
D
A
 
S
M
 
I
L
 
R
K
 
G
Y
 
A
L
 
Y
V
 
V
N
 
N
L
 
L
Q
 
E
S
 
S
N
 
Y
R
 
E
F
 
Y
Y
 
S
R
 
Y
G
 
G
D
 
I
D
 
D
C
 
L
L
 
L
L
 
A
L
 
S
G
 
G
Q
 
M
L
 
A
D
 
D
F
 
L
G
 
G
D
 
D
L
 
M
L
 
E
P
 
E
G
 
S
E
 
E
D
 
D
A
 
-
D
 
-
V
 
-
D
 
-
A
 
-
L
 
-
R
 
-
A
 
-
A
 
-
V
 
V
A
 
E
A
 
Y
M
 
V
D
 
I
E
 
D
R
 
T
V
 
V
I
 
E
E
 
S
V
 
V
A
 
V
S
 
S
A
 
A
I
 
V
M
 
M
E
 
S
A
 
D
G
 
G
L
 
K
E
 
I
P
 
P
I
 
I
V
 
M
I
 
L
G
 
G
G
 
G
G
 
E
H
|
H
N
 
S
N
 
I
A
 
T
F
 
V
G
 
G
L
 
A
L
 
V
M
 
-
S
 
-
V
 
-
K
 
-
N
 
R
A
 
A
F
 
L
G
 
P
R
 
K
P
 
D
A
 
V
A
 
D
A
 
L
V
 
V
N
 
I
L
 
V
D
|
D
P
 
A
H
|
H
S
 
S
D
|
D
F
 
F
R
 
R
L
 
-
R
 
-
E
 
-
G
 
S
R
 
S
H
 
Y
S
 
M
G
 
G
N
 
N
G
 
K
F
 
Y
S
 
N
Y
x
H
A
 
A
A
 
C
A
 
V
S
 
T

Sites not aligning to the query:

4mynA Crystal structure of trypanosoma cruzi formiminoglutamase n114h variant with mn2+2 (see paper)
25% identity, 72% coverage: 33:280/345 of query aligns to 2:241/298 of 4mynA

query
sites
4mynA
E
 
D
G
 
D
P
 
P
T
 
R
L
 
L
V
 
L
A
 
S
I
 
L
L
 
F
E
 
S
S
 
A
A
 
Q
K
 
R
A
 
E
Q
 
E
G
 
D
A
 
A
R
 
D
F
 
I
V
 
V
L
 
I
L
 
I
G
 
G
V
 
F
G
 
P
E
 
Y
D
 
D
A
 
E
G
 
G
P
 
C
R
 
V
A
 
R
N
 
N
L
 
G
G
 
G
R
 
R
G
 
A
G
 
G
A
 
A
T
 
K
N
 
K
A
 
G
F
 
P
E
 
A
A
 
A
M
 
F
L
 
R
K
 
F
Y
 
F
L
 
L
V
 
Q
N
 
R
L
 
L
Q
 
G
S
 
S
-
 
V
N
 
N
R
 
N
F
 
L
Y
 
E
R
 
L
G
 
N
D
 
V
D
 
D
C
 
A
L
 
S
L
 
H
L
 
L
G
 
K
Q
 
L
L
 
Y
D
 
D
F
 
A
G
 
G
D
 
D
L
 
I
L
 
T
P
 
-
G
 
-
E
 
-
D
 
-
A
 
-
D
 
-
V
 
A
D
 
S
A
 
T
L
 
L
R
 
E
A
 
E
A
 
A
V
 
H
A
 
E
A
 
K
M
 
L
D
 
E
E
 
S
R
 
K
V
 
V
I
 
F
E
 
T
V
 
V
A
 
-
S
 
-
A
 
-
I
 
-
M
 
L
E
 
A
A
 
R
G
 
G
L
 
A
E
 
F
P
 
P
I
 
F
V
 
V
I
 
I
G
 
G
G
 
G
G
 
G
H
|
H
N
 
D
N
 
Q
A
 
S
F
 
A
G
 
P
L
 
N
L
 
G
M
 
R
S
 
A
V
 
M
K
 
L
N
 
R
A
 
A
F
 
F
G
 
P
R
 
G
P
 
D
A
 
V
A
 
G
A
 
V
V
 
I
N
 
N
L
 
V
D
|
D
P
 
S
H
|
H
S
 
L
D
|
D
F
 
V
R
 
R
-
 
P
-
 
P
L
 
L
R
 
S
E
 
D
G
 
G
R
 
R
-
 
V
H
 
H
S
|
S
G
 
G
N
 
T
G
 
P
F
 
F
S
 
R
Y
 
Q
A
 
L
A
 
-
A
 
-
S
 
-
G
 
-
A
 
-
L
 
-
D
 
-
F
 
-
Y
 
-
H
 
-
V
 
-
L
 
-
G
 
-
L
 
L
H
 
E
E
 
E
L
 
S
K
 
S
N
 
F
S
 
S
E
 
G
A
 
K
N
 
R
L
 
F
E
 
V
Q
 
E
L
 
F
A
 
A
A
 
C
F
 
Q
G
 
G
G
 
S
S
 
Q
W
 
C
H
 
G
T
 
A
L
 
L
Q
 
H
Q
 
A
I
 
Q
W
 
Y
V
 
V
R
 
R
-
 
D
-
 
H
-
 
Q
-
 
G
-
 
H
-
 
L
-
 
M
-
 
W
-
 
L
G
 
S
E
 
E
L
 
V
S
 
R
L
 
K
D
 
K
D
 
G
A
 
A
L
 
V
K
 
A
H
 
A
I
 
L
G
 
E
K
 
D
T
 
A
L
 
F
R
 
G
A
 
L
T
 
T
G
 
G
L
 
K
P
 
N
V
 
T
A
 
F
L
 
F
E
 
S
L
 
F
D
|
D
L
 
V
D
|
D
A
 
S
I
 
L
-
 
K
-
 
S
A
 
S
N
 
D
M
 
M
P
 
P
S
 
G
S
 
V
A
 
S
M
 
C
T
 
P
A
 
A
A
 
A

Sites not aligning to the query:

Query Sequence

>6939103 FitnessBrowser__SB2B:6939103
MQHLIIFSAKDMTPILGKRPGETRLGNHFLLPEGPTLVAILESAKAQGARFVLLGVGEDA
GPRANLGRGGATNAFEAMLKYLVNLQSNRFYRGDDCLLLGQLDFGDLLPGEDADVDALRA
AVAAMDERVIEVASAIMEAGLEPIVIGGGHNNAFGLLMSVKNAFGRPAAAVNLDPHSDFR
LREGRHSGNGFSYAAASGALDFYHVLGLHELKNSEANLEQLAAFGGSWHTLQQIWVRGEL
SLDDALKHIGKTLRATGLPVALELDLDAIANMPSSAMTAAGVPLLDAARYISHIARHCDC
AYLHLAEAAPSCHDSGEDAGLRETGQSLTELVYAYIRGRHLALGA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory