SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 6939496 FitnessBrowser__SB2B:6939496 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
41% identity, 71% coverage: 17:244/322 of query aligns to 5:234/285 of 4yerA

query
sites
4yerA
I
 
I
E
 
V
T
 
V
R
 
E
G
 
N
M
 
L
T
 
V
R
 
K
Q
 
K
F
|
F
G
 
G
A
 
D
L
x
F
K
 
E
A
 
A
V
 
V
D
 
K
G
 
G
V
 
V
D
 
S
L
 
F
A
 
S
I
 
V
P
 
K
R
 
K
G
 
G
S
 
E
I
 
I
Y
 
F
G
 
A
F
 
F
L
 
L
G
 
G
P
 
P
N
|
N
G
|
G
C
 
A
G
|
G
K
|
K
S
x
T
T
|
T
S
 
T
I
 
I
R
 
H
M
 
M
L
 
L
T
 
T
G
 
T
L
 
L
L
 
L
K
 
K
P
 
P
T
 
T
S
 
S
G
 
G
E
 
K
I
 
A
R
 
W
V
 
V
L
 
A
G
 
G
E
 
H
P
 
D
L
 
V
K
 
L
G
 
K
A
 
E
E
 
P
E
 
R
K
 
E
L
 
V
R
 
R
R
 
R
R
 
K
I
 
I
G
 
G
Y
 
I
M
 
V
T
 
F
Q
 
Q
K
 
D
F
 
Q
S
 
S
L
 
L
Y
 
D
E
 
R
N
 
E
L
 
L
T
 
T
V
 
A
L
 
Y
E
 
E
N
 
N
L
 
M
R
 
Y
F
 
I
V
 
H
A
 
G
R
 
K
I
 
I
Y
 
Y
G
 
G
L
 
Y
Q
 
G
G
 
G
N
 
E
K
 
K
A
 
L
K
 
K
D
 
K
R
 
R
I
 
I
E
 
L
Q
 
E
L
 
L
L
 
L
S
 
E
L
 
F
Y
 
V
S
 
E
L
 
L
E
 
L
G
 
E
R
 
F
E
 
K
S
 
D
Q
 
K
M
 
P
A
 
V
G
 
K
S
x
T
M
x
F
S
|
S
G
 
G
G
 
G
Q
 
M
K
 
A
Q
 
R
R
 
R
L
 
L
A
 
E
L
 
I
A
 
A
A
 
R
A
 
S
T
 
L
I
 
I
H
 
H
E
 
E
P
 
P
E
 
E
L
 
V
L
 
L
F
 
F
L
 
L
D
 
D
E
 
E
P
 
P
T
 
T
S
 
I
A
 
G
V
 
L
D
 
D
P
 
P
E
 
H
N
 
T
R
 
R
R
 
A
E
 
H
F
 
M
W
 
W
E
 
E
R
 
Y
L
 
I
F
 
S
D
 
K
L
 
M
S
 
K
A
 
K
K
 
E
-
 
H
G
 
N
C
 
M
T
 
T
I
 
I
L
 
F
V
 
L
S
 
T
T
 
T
H
 
H
Y
 
Y
M
 
M
D
 
D
E
 
E
A
 
A
E
 
E
R
 
Q
-
 
L
C
 
A
H
 
D
G
 
R
L
 
V
A
 
A
I
 
I
L
 
I
E
 
D
R
 
H
G
 
G
I
 
K
K
 
I
R
 
I
A
 
A
D
 
L
G
 
G
S
 
T
P
 
P
K
 
T
A
 
E
L
 
L
M
 
K
Q
 
R
A
 
M
M
 
V
G
 
G
A
 
K
R
 
E
V
 
I
V
 
I
E
 
Y
I
 
V

P34358 ABC transporter ced-7; Cell death protein 7 from Caenorhabditis elegans (see 2 papers)
38% identity, 65% coverage: 30:239/322 of query aligns to 561:770/1704 of P34358

query
sites
P34358
K
 
R
A
 
A
V
 
V
D
 
D
G
 
G
V
 
L
D
 
S
L
 
L
A
 
R
I
 
A
P
 
V
R
 
R
G
 
G
S
 
Q
I
 
C
Y
 
S
G
 
I
F
 
L
L
 
L
G
 
G
P
 
H
N
 
N
G
 
G
C
 
A
G
 
G
K
|
K
S
 
S
T
 
T
S
 
T
I
 
F
R
 
S
M
 
S
L
 
I
T
 
A
G
 
G
L
 
I
L
 
I
K
 
R
P
 
P
T
 
T
S
 
N
G
 
G
E
 
R
I
 
I
R
 
T
V
 
I
L
 
C
G
 
G
E
 
Y
P
 
D
L
 
V
K
 
G
G
 
N
A
 
E
E
 
P
E
 
G
K
 
E
L
 
T
R
 
R
R
 
R
R
 
H
I
 
I
G
 
G
Y
 
M
M
 
C
T
 
P
Q
 
Q
K
 
Y
F
 
N
S
 
P
L
 
L
Y
 
Y
E
 
D
N
 
Q
L
 
L
T
 
T
V
 
V
L
 
S
E
|
E
N
 
H
L
 
L
R
 
K
F
 
L
V
 
V
A
 
-
R
 
-
I
 
-
Y
 
Y
G
 
G
L
 
L
Q
 
K
G
 
G
N
 
A
K
 
R
A
 
E
K
 
K
D
 
D
-
 
F
-
 
K
-
 
Q
R
 
D
I
 
M
E
 
K
Q
 
R
L
 
L
L
 
L
S
 
S
L
 
D
Y
 
V
S
 
K
L
 
L
E
 
D
G
 
F
R
 
K
E
 
E
S
 
N
Q
 
E
M
 
K
A
 
A
G
 
V
S
 
N
M
 
L
S
 
S
G
 
G
G
 
G
Q
 
M
K
 
K
Q
 
R
R
 
K
L
 
L
A
 
C
L
 
V
A
 
C
A
 
M
A
 
A
T
 
L
I
 
I
H
 
G
E
 
D
P
 
S
E
 
E
L
 
V
L
 
V
F
 
L
L
 
L
D
 
D
E
 
E
P
 
P
T
 
T
S
 
A
A
 
G
V
 
M
D
 
D
P
 
P
E
 
G
N
 
A
R
 
R
R
 
Q
E
 
D
F
 
V
W
 
-
E
 
Q
R
 
K
L
 
L
F
 
V
D
 
E
L
 
R
S
 
E
A
 
K
K
 
A
G
 
N
C
 
R
T
 
T
I
 
I
L
 
L
V
 
L
S
 
T
T
 
T
H
 
H
Y
 
Y
M
 
M
D
 
D
E
 
E
A
 
A
E
 
E
R
 
R
C
 
L
-
 
G
H
 
D
G
 
W
L
 
V
A
 
F
I
 
I
L
 
M
E
 
S
R
 
H
G
 
G
I
 
K
K
 
L
R
 
V
A
 
A
D
 
S
G
 
G
S
 
T
P
 
N
K
 
Q
A
 
Y
L
 
L
M
 
K
Q
 
Q
A
 
K
M
 
F
G
 
G
A
 
T

Sites not aligning to the query:

F1MWM0 Retinal-specific phospholipid-transporting ATPase ABCA4; ATP-binding cassette sub-family A member 4; RIM ABC transporter; RIM protein; RmP; Retinal-specific ATP-binding cassette transporter; EC 7.6.2.1 from Bos taurus (Bovine) (see 2 papers)
36% identity, 65% coverage: 31:239/322 of query aligns to 945:1153/2281 of F1MWM0

query
sites
F1MWM0
A
 
A
V
 
V
D
 
D
G
 
R
V
 
L
D
 
N
L
 
I
A
 
T
I
 
F
P
 
Y
R
 
E
G
 
S
S
 
Q
I
 
I
Y
 
T
G
 
A
F
 
F
L
 
L
G
 
G
P
 
H
N
 
N
G
 
G
C
 
A
G
 
G
K
 
K
S
 
T
T
 
T
S
 
T
I
 
L
R
 
S
M
 
I
L
 
M
T
 
T
G
 
G
L
 
L
L
 
L
K
 
P
P
 
P
T
 
T
S
 
S
G
 
G
E
 
T
I
 
V
R
 
L
V
 
V
L
 
G
G
 
G
E
 
K
P
 
D
L
 
I
K
 
E
G
 
T
A
 
N
E
 
L
E
 
D
K
 
A
L
 
I
R
 
R
R
 
Q
R
 
S
I
 
L
G
 
G
Y
 
M
M
 
C
T
 
P
Q
 
Q
K
 
H
F
 
N
S
 
I
L
 
L
Y
 
F
E
 
H
N
 
H
L
 
L
T
 
T
V
 
V
L
 
A
E
 
E
N
 
H
L
 
I
R
 
L
F
 
F
V
 
Y
A
 
A
R
 
Q
I
 
L
Y
 
K
G
 
G
L
 
R
Q
 
S
G
 
W
N
 
D
K
 
K
A
 
A
K
 
Q
D
 
L
R
 
E
I
 
M
E
 
E
Q
 
A
L
 
M
L
 
L
S
 
E
L
 
D
Y
 
T
S
 
G
L
 
L
E
 
H
G
 
H
R
 
K
E
 
R
S
 
N
Q
 
E
M
 
E
A
 
A
G
 
Q
S
 
D
M
 
L
S
 
S
G
 
G
G
 
G
Q
 
V
K
 
Q
Q
 
R
R
 
K
L
 
L
A
 
S
L
 
V
A
 
A
A
 
I
A
 
A
T
 
F
I
 
V
H
 
G
E
 
D
P
 
A
E
 
K
L
 
V
L
 
V
F
 
V
L
 
L
D
 
D
E
 
E
P
 
P
T
 
T
S
 
S
A
 
G
V
 
V
D
 
D
P
 
P
E
 
Y
N
 
S
R
 
R
R
 
R
E
 
S
F
 
I
W
 
W
E
 
D
R
 
L
L
 
L
F
 
L
D
 
K
L
 
Y
S
 
R
A
 
S
K
 
-
G
 
G
C
 
R
T
 
T
I
 
I
L
 
I
V
 
M
S
 
S
T
 
T
H
 
H
Y
 
H
M
 
M
D
 
D
E
 
E
A
 
A
E
 
D
R
 
I
C
 
L
H
 
G
G
 
D
-
 
R
L
 
I
A
 
A
I
 
I
L
 
I
E
 
S
R
 
Q
G
 
G
I
 
R
K
 
L
R
 
Y
A
 
C
D
 
S
G
 
G
S
 
T
P
 
P
K
 
L
A
 
F
L
 
L
M
 
K
Q
 
N
A
 
C
M
 
F
G
 
G
A
 
T

Sites not aligning to the query:

P78363 Retinal-specific phospholipid-transporting ATPase ABCA4; ATP-binding cassette sub-family A member 4; RIM ABC transporter; RIM proteinv; RmP; Retinal-specific ATP-binding cassette transporter; Stargardt disease protein; EC 7.6.2.1 from Homo sapiens (Human) (see 43 papers)
36% identity, 65% coverage: 31:239/322 of query aligns to 945:1153/2273 of P78363

query
sites
P78363
A
|
A
V
|
V
D
|
D
G
x
R
V
x
L
D
x
N
L
x
I
A
x
T
I
x
F
P
x
Y
R
x
E
G
x
N
S
x
Q
I
|
I
Y
x
T
G
x
A
F
|
F
L
|
L
G
|
G
P
x
H
N
|
N
G
|
G
C
x
A
G
|
G
K
|
K
S
x
T
T
|
T
S
x
T
I
x
L
R
x
S
M
x
I
L
|
L
T
|
T
G
|
G
L
|
L
L
|
L
K
x
P
P
|
P
T
|
T
S
|
S
G
|
G
E
x
T
I
x
V
R
x
L
V
|
V
L
x
G
G
|
G
E
x
R
P
x
D
L
x
I
K
x
E
G
x
T
A
x
S
E
x
L
E
x
D
K
x
A
L
x
V
R
|
R
R
x
Q
R
x
S
I
x
L
G
|
G
Y
x
M
M
x
C
T
x
P
Q
|
Q
K
x
H
F
x
N
S
x
I
L
|
L
Y
x
F
E
x
H
N
x
H
L
|
L
T
|
T
V
|
V
L
x
A
E
|
E
N
x
H
L
x
M
R
x
L
F
|
F
V
x
Y
A
|
A
R
x
Q
I
x
L
Y
x
K
G
|
G
L
x
K
Q
x
S
G
x
Q
N
x
E
K
x
E
A
|
A
K
x
Q
D
x
L
R
x
E
I
x
M
E
|
E
Q
x
A
L
x
M
L
|
L
S
x
E
L
x
D
Y
x
T
S
x
G
L
|
L
E
x
H
G
x
H
R
x
K
E
x
R
S
x
N
Q
x
E
M
x
E
A
|
A
G
x
Q
S
x
D
M
x
L
S
|
S
G
|
G
G
|
G
Q
x
M
K
x
Q
Q
x
R
R
x
K
L
|
L
A
x
S
L
x
V
A
|
A
A
x
I
A
|
A
T
x
F
I
x
V
H
x
G
E
x
D
P
x
A
E
x
K
L
x
V
L
x
V
F
x
I
L
|
L
D
|
D
E
|
E
P
|
P
T
|
T
S
|
S
A
x
G
V
|
V
D
|
D
P
|
P
E
x
Y
N
x
S
R
|
R
R
|
R
E
x
S
F
x
I
W
|
W
E
x
D
R
x
L
L
|
L
F
x
L